Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00196 ATGGGGGGTCAAAATTGTAATGGTTGCAGATCGTGGGAAGAGGACATTTACTGGTCCCATTTTCAATTCCACCATTTTGTGCAATTTCTCCGTGCCGATTATGATCAACACCTTGCACTTCCGAAAACATTTTCGGATAATTTAAAGAAGAAGTTGCCGGAAAATGTGACCCTTAAGAGTCCTAGTGGTGTTGTGTGGAATATAGGGATGACTACTAGAGAAGATACCTTGTACTTCGTGCATGGTTGGGAACAATTTGTGAAAGACCACTGTTTGAAAGAGAATGATTTCCTGGTCTTTAAGTACAATGGCGAATCTCAGTTTGATGTTTTAATATTTGATGGGGAGAGCTTGTGTGAGAAGGCAGGTTCTTATTTTGTTCGAAAATGTGGGCACACTGAAACTGAACATGTGGGTGGAAGTCTCAACAAGAAAAGGGACACAGATAATTCTTTGGAAGAAGGCAATATCCCTTCAAATGCTGGTGTGGAATGCGCTTTGCATGAGAAATCTGTGCATGCTAATGGTACGAAGGAGCCAATGGATGTACCTCCCGAAACTCCATCTGCTGAAAAGACTTTCAATGCTGGTGTTGAATCTGCTGGTGTGGAGCAATTTACATCTGATGGAGGAGTCACTGTGGCAGCTGTTCCCTCCGAAACTGCTAATGGGAAAAGGATCAGGAAGATTGTTTCTGCTGTTAAGCATGTCCAGACCAAGCGGAGGGGAAGACCAGCTAAAGTGCATCATGTTCGTGAGAGAACACTTGACTGGGTGACTGCACTAGAAGCTGCTGAACCTGTTTCTGCTGCTAGAAGTGGGACATATGAGGTATACAAATCAAATAGAAGGCCTGTCACACAGGATGAGATTAATAAAGCCAAAACATTGGCCGAAGCAGCATGCAGCAGCGACACTTTGCTCGTAGTCATGAAACCCTCACATGTGTACAAGAGATTCTTCGTGTCAATGAATGGTAAGTGGATAGGAAAATATGTCTCTCCAACATCTCAAGATGTGATATTGCGCATGGGTAAGGGTGAATGGATTGCCAGATACAGCTTCCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAACATTTTGCTTTGGATAATAACCTTGAAGAGGGTGATGCCTGTGTGTTTAAACCAGCTGGCCAAATGAACAACACTTTTGTCATTGATATGACCATTTTCAGAGTTGTTCAGGAGACTGTTCCTCTCACTGCAGTATCTCCTGGAACTGGAAGAAGAAGGGGTAGGAAGCCAGCAGTGAAGTCTATTCAGACAGAAACTTAG 1308 0.4335 MGGQNCNGCRSWEEDIYWSHFQFHHFVQFLRADYDQHLALPKTFSDNLKKKLPENVTLKSPSGVVWNIGMTTREDTLYFVHGWEQFVKDHCLKENDFLVFKYNGESQFDVLIFDGESLCEKAGSYFVRKCGHTETEHVGGSLNKKRDTDNSLEEGNIPSNAGVECALHEKSVHANGTKEPMDVPPETPSAEKTFNAGVESAGVEQFTSDGGVTVAAVPSETANGKRIRKIVSAVKHVQTKRRGRPAKVHHVRERTLDWVTALEAAEPVSAARSGTYEVYKSNRRPVTQDEINKAKTLAEAACSSDTLLVVMKPSHVYKRFFVSMNGKWIGKYVSPTSQDVILRMGKGEWIARYSFHNIRNNGGLTGGWKHFALDNNLEEGDACVFKPAGQMNNTFVIDMTIFRVVQETVPLTAVSPGTGRRRGRKPAVKSIQTET 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00196 435 Gene3D - 285 407 IPR015300 -
Pumo9g00196 435 SUPERFAMILY DNA-binding pseudobarrel domain 20 114 IPR015300 -
Pumo9g00196 435 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 406 IPR044837 -
Pumo9g00196 435 ProSiteProfiles B3 DNA-binding domain profile. 307 403 IPR003340 GO:0003677
Pumo9g00196 435 Gene3D - 19 119 IPR015300 -
Pumo9g00196 435 SMART B3_2 26 116 IPR003340 GO:0003677
Pumo9g00196 435 SMART B3_2 307 405 IPR003340 GO:0003677
Pumo9g00196 435 CDD B3_DNA 310 403 IPR003340 GO:0003677
Pumo9g00196 435 MobiDBLite consensus disorder prediction 137 158 - -
Pumo9g00196 435 MobiDBLite consensus disorder prediction 415 435 - -
Pumo9g00196 435 CDD B3_DNA 24 114 IPR003340 GO:0003677
Pumo9g00196 435 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Pumo9g00196 435 Pfam B3 DNA binding domain 309 397 IPR003340 GO:0003677
Pumo9g00196 435 SUPERFAMILY DNA-binding pseudobarrel domain 308 397 IPR015300 -
Pumo9g00196 435 MobiDBLite consensus disorder prediction 137 152 - -
Pumo9g00196 435 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00196 Pumo-Chr9 2818785 2822557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00196 262 403 REM Transcription Factor Family AT4G33280 33.750 1.58e-22 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo9g00196 B3 4.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00196 - - gmx:100777709 773.081