Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00195 ATGTTCACCAATTCACACACGGCAATGCAAACCTTATCATCACCTTTGTCGGAGCCAGACCTCTCCTTGAACATAAGCCCTCCCTCTATCTCAGATTCTGAAGCCAAAGATGTTGGAAGCTTTGGAAAAGTGCTTTACAATGATATTTGTTCAACTTCTGATTCGGGTAGTAGTGGAGGAAGTGATTTGAGCCACGAGTTCCACAACCTTGGTGGTCATCATCGTGAGCCGACATTGAAGTTAGGCTTTGGAACAGTGGATTTGAATCCGCATCATCATCAAGTGCAAGGTGTCCCAACAAGAAGCTTCAATCACCACCACCACCTCCAACCTCACATCTATGGCCGCGATTTCAAACGAAGTGCAAGAGTCGTCAATGGTGTCAAAAGAAGCGTCAGAGCTCCTAGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCATGCGGTTCAACTTCTTGGCGGCCATGAAAGAGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACAGCAGGCCATGGCCAGACAGATATTGGATTGAACCCAAGGCCAGGGATTAATGTTCATCATCTCCATGCACCCTCACCCAATTTACCAGACCCCATTCAAAATTCCCACAGGACATCGTGGCAATCATCAATAGAGACAAAAACAAACAATAGTAGACAAGAACCCGAAATCGGTTTGACGTATTCTCACCTCAAGGGAAATAATGAAACCATGGTGGATGGGCACAATTATGGAGGGTTGGATTCTACCCCTTTGTCACGTTCCGAGGCAACAATGCTTGACCTTGAATTCACCCTTGGAAGGCCCAATTGGCAAAAAGATCACCACGCCGAATCATCAAGAGAGTTAACTCTTCTCAAGTGTTAA 954 0.4581 MFTNSHTAMQTLSSPLSEPDLSLNISPPSISDSEAKDVGSFGKVLYNDICSTSDSGSSGGSDLSHEFHNLGGHHREPTLKLGFGTVDLNPHHHQVQGVPTRSFNHHHHLQPHIYGRDFKRSARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTAGHGQTDIGLNPRPGINVHHLHAPSPNLPDPIQNSHRTSWQSSIETKTNNSRQEPEIGLTYSHLKGNNETMVDGHNYGGLDSTPLSRSEATMLDLEFTLGRPNWQKDHHAESSRELTLLKC 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00195 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 135 188 IPR006447 GO:0003677
Pumo9g00195 317 Pfam Myb-like DNA-binding domain 136 187 IPR001005 -
Pumo9g00195 317 MobiDBLite consensus disorder prediction 1 33 - -
Pumo9g00195 317 Gene3D - 134 191 - -
Pumo9g00195 317 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 19 305 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pumo9g00195 317 MobiDBLite consensus disorder prediction 1 34 - -
Pumo9g00195 317 FunFam Myb family transcription factor 133 191 - -
Pumo9g00195 317 SUPERFAMILY Homeodomain-like 132 189 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00195 Pumo-Chr9 2785950 2790575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00195 76 203 G2-like Transcription Factor Family AT5G42630 67.969 8.70e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo9g00195 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00195 - - gmx:106795723 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00195 9 2785950 2790575 Pumo9g00195 9 2785950 2790575 ECH