Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00193 ATGTTTGGCGAAGCCGTTCCACGTCCACAGTTCATGCAATCGGAGCCGAGAATGTCGACGACGGAGGCCCTAACCGACGACGAGTTCACAATGCGAAGCAGCAGCGCCGCGTCGCCGATGAGCTCTTACTACTACGACCAGGGAAGGTTGAGCGGCGAAGGCTCACCCATGATGATGTCGCCGTGGAACCAAACAACCAATTCCCCATTCTCCAAGCCTCAGTGGTCCCAACTCGAGGACAACAGCGTGCCGCAAAACGCGCTCGTAGGTTCCCTTGTCCGCGAAGAGGGACACATCTATTCACTTGCTGCCTCCGGCGATCTCCTTTACACCGGTTCCGACAGCAAGAATATTCGTGTGTGGAAGAATCTGCAGGAATATTCCGGTTTCAAATCCAACAGCGGTTTGGTGAAAACCATAATACTGTCTGGTCAGAAAATCTTCACCGGTCACCAAGACGGTAAAATCCGCGTCTGGAAGGTCTCCCCCAAGAACCCCAGCGTCCACAAACGCGCCGGCACGTTGCCAACGCTTAAAGACATCTTCAAGAGCTCAATTAAGCCCAGCAACTACGTCGAGGTTCGACGACATAAAACGGCGTTATGGATCAAACACTCCGATGCAGTTTCGTGTTTGAGTCTTTCAGAAGACAAAACGTATCTATACTCTGCGTCGTGGGACAGGACAATCAAGGTGTGGAGGATTTCCGACTCCAAGTGCCTGGAGTCGATCCACGCGCACGACGACGCGGTCAACGCCGTGGTGTGCGGAGACGAGGGCGTCATGTTTTCCGGCTCGGCGGACGGCACAGTCAAGGTGTGGCGGCGTGAGCCGCGCGGGAAGGGCCTCAAGCACGCGGCGGTCAAGACTCTGCTGAAGCAGGAGTGCGCGGTGACGGCGCTAGCGGTGGACTCGGCGGGCTCCATGGTCTACTGCGGCGCCTCCGACGGCTTGGTCAATTTTTGGGAGCGCGAGAAGGGTTACGCGCACGGCGGGGTTTTGAAGGGTCACAAGCTAGCGGTGCTGTGCCTCACCGCCGCGGGGACGTTAGTGTTTAGCGGCTCCGCGGATAAGACCATATGCGTGTGGAAACGCGAGGGTGTGATTCACACGTGCGTGTCAGTTCTCACGGGCCACGACGGTCCCGTGAAGTGCCTCGCCGTGGAGGAGGACCGTGAATCCGCCGCGAGAGGGGACCGAGACCGGCGTTGGGTTTTGTACAGTGGAAGTTTGGATAAGTCGGTTAAGGTTTGGAGCGTTTCGGAATCGATTAACAATAATCAGGTGCTGCACCACCGCATGGCTTCTGATGCGGACTCGTTGCCTTCTGTTTCCGACAGTAGCTTCTCTTCGGGCCGGACCAATGGGAGGAACTGA 1377 0.5701 MFGEAVPRPQFMQSEPRMSTTEALTDDEFTMRSSSAASPMSSYYYDQGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQLEDNSVPQNALVGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIKHSDAVSCLSLSEDKTYLYSASWDRTIKVWRISDSKCLESIHAHDDAVNAVVCGDEGVMFSGSADGTVKVWRREPRGKGLKHAAVKTLLKQECAVTALAVDSAGSMVYCGASDGLVNFWEREKGYAHGGVLKGHKLAVLCLTAAGTLVFSGSADKTICVWKREGVIHTCVSVLTGHDGPVKCLAVEEDRESAARGDRDRRWVLYSGSLDKSVKVWSVSESINNNQVLHHRMASDADSLPSVSDSSFSSGRTNGRN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00193 458 SMART WD40_4 85 122 IPR001680 GO:0005515
Pumo9g00193 458 SMART WD40_4 284 323 IPR001680 GO:0005515
Pumo9g00193 458 SMART WD40_4 327 364 IPR001680 GO:0005515
Pumo9g00193 458 SMART WD40_4 369 419 IPR001680 GO:0005515
Pumo9g00193 458 SMART WD40_4 195 234 IPR001680 GO:0005515
Pumo9g00193 458 SMART WD40_4 123 160 IPR001680 GO:0005515
Pumo9g00193 458 SMART WD40_4 237 275 IPR001680 GO:0005515
Pumo9g00193 458 MobiDBLite consensus disorder prediction 13 34 - -
Pumo9g00193 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Pumo9g00193 458 FunFam BnaA09g28200D protein 192 279 - -
Pumo9g00193 458 MobiDBLite consensus disorder prediction 1 34 - -
Pumo9g00193 458 MobiDBLite consensus disorder prediction 435 458 - -
Pumo9g00193 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 239 - -
Pumo9g00193 458 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515
Pumo9g00193 458 Pfam WD domain, G-beta repeat 96 122 IPR001680 GO:0005515
Pumo9g00193 458 Pfam WD domain, G-beta repeat 371 419 IPR001680 GO:0005515
Pumo9g00193 458 Pfam WD domain, G-beta repeat 332 364 IPR001680 GO:0005515
Pumo9g00193 458 Pfam WD domain, G-beta repeat 205 233 IPR001680 GO:0005515
Pumo9g00193 458 Gene3D - 283 457 IPR015943 GO:0005515
Pumo9g00193 458 Gene3D - 75 186 IPR015943 GO:0005515
Pumo9g00193 458 MobiDBLite consensus disorder prediction 440 458 - -
Pumo9g00193 458 Gene3D - 192 282 IPR015943 GO:0005515
Pumo9g00193 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 274 IPR001680 GO:0005515
Pumo9g00193 458 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 36 424 IPR045182 -
Pumo9g00193 458 CDD WD40 96 419 - -
Pumo9g00193 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 364 IPR001680 GO:0005515
Pumo9g00193 458 SUPERFAMILY WD40 repeat-like 89 432 IPR036322 GO:0005515
Pumo9g00193 458 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Pumo9g00193 458 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Pumo9g00193 458 PRINTS G protein beta WD-40 repeat signature 221 235 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00193 Pumo-Chr9 2758682 2760711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00193 241 421 Miscellaneous Gene Families AT5G08390 26.738 2.15e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00193 - - gmx:100805150 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01425 10 19002638 19007001 Pumo9g00193 9 2758682 2760711 PCT