Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00179 ATGGCAAATGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTGCTCCACCAACAGTCATAACAATGATGCTGGCAACTTTGAATGCAACATTTGCTTTGACTTAGCACAGGATCCTATAATTACTTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTGCACTTCCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCTCTTGTTGAAGAGGAGAAGTTGGTTCCCTTGTATGGGAGAGGAAAGACATCAACTGATCCGAGATCAAAGTCTATTCCCGGTGTTAATATCCCGCATCGTCCTGCCGGTCAGAGACCTGAAACTGCTCCTCCGCCTGAACCAAACCCTTTTTCTCAACACGGGTTTGGCTTCACAGGAGGATTGGGAGGATTTGCACCGGCATCAACCGCAAGATTTGGGAATTTCACATTATCTGCGGCATTTGGTGGTTTTATACCATCCTTATTTAACTTTCAGTTGCATGGATTGCATGATGTGGCCATGTATGGTGGAGCAGCTGGTTTTCCTTATGGGTTTTCATTTCACAATGGCCATGTTCATAGATATCCTCCGCAAACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGCTGTTTATTATTTTTTGTGTTGTTCTTGCTTTTATTTGGCAATAG 684 0.4518 MANGFGESTSRSPPSPSCSTNSHNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPEPNPFSQHGFGFTGGLGGFAPASTARFGNFTLSAAFGGFIPSLFNFQLHGLHDVAMYGGAAGFPYGFSFHNGHVHRYPPQTGQGQQDYYLKRLLLFIIFCVVLAFIWQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00179 227 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Pumo9g00179 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 86 IPR013083 -
Pumo9g00179 227 SMART ring_2 32 72 IPR001841 -
Pumo9g00179 227 MobiDBLite consensus disorder prediction 1 20 - -
Pumo9g00179 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo9g00179 227 CDD RING-HC_AtRMA-like 30 74 - -
Pumo9g00179 227 MobiDBLite consensus disorder prediction 86 123 - -
Pumo9g00179 227 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Pumo9g00179 227 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Pumo9g00179 227 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Pumo9g00179 227 SUPERFAMILY RING/U-box 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00179 Pumo-Chr9 2469685 2471906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00179 16 210 C3H Transcription Factor Family AT1G19310 65.550 7.48e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00179 K10666 - gmx:100527488 377.867