Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo9g00179 | ATGGCAAATGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTGCTCCACCAACAGTCATAACAATGATGCTGGCAACTTTGAATGCAACATTTGCTTTGACTTAGCACAGGATCCTATAATTACTTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTGCACTTCCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCTCTTGTTGAAGAGGAGAAGTTGGTTCCCTTGTATGGGAGAGGAAAGACATCAACTGATCCGAGATCAAAGTCTATTCCCGGTGTTAATATCCCGCATCGTCCTGCCGGTCAGAGACCTGAAACTGCTCCTCCGCCTGAACCAAACCCTTTTTCTCAACACGGGTTTGGCTTCACAGGAGGATTGGGAGGATTTGCACCGGCATCAACCGCAAGATTTGGGAATTTCACATTATCTGCGGCATTTGGTGGTTTTATACCATCCTTATTTAACTTTCAGTTGCATGGATTGCATGATGTGGCCATGTATGGTGGAGCAGCTGGTTTTCCTTATGGGTTTTCATTTCACAATGGCCATGTTCATAGATATCCTCCGCAAACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGCTGTTTATTATTTTTTGTGTTGTTCTTGCTTTTATTTGGCAATAG | 684 | 0.4518 | MANGFGESTSRSPPSPSCSTNSHNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPEPNPFSQHGFGFTGGLGGFAPASTARFGNFTLSAAFGGFIPSLFNFQLHGLHDVAMYGGAAGFPYGFSFHNGHVHRYPPQTGQGQQDYYLKRLLLFIIFCVVLAFIWQ | 227 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo9g00179 | 227 | FunFam | E3 ubiquitin-protein ligase RNF185 isoform X2 | 16 | 86 | - | - | |
Pumo9g00179 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 86 | IPR013083 | - | |
Pumo9g00179 | 227 | SMART | ring_2 | 32 | 72 | IPR001841 | - | |
Pumo9g00179 | 227 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Pumo9g00179 | 227 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 18 | 223 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Pumo9g00179 | 227 | CDD | RING-HC_AtRMA-like | 30 | 74 | - | - | |
Pumo9g00179 | 227 | MobiDBLite | consensus disorder prediction | 86 | 123 | - | - | |
Pumo9g00179 | 227 | ProSitePatterns | Zinc finger RING-type signature. | 47 | 56 | IPR017907 | - | |
Pumo9g00179 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 32 | 73 | IPR001841 | - | |
Pumo9g00179 | 227 | Pfam | Zinc finger, C3HC4 type (RING finger) | 32 | 72 | IPR018957 | GO:0046872 | |
Pumo9g00179 | 227 | SUPERFAMILY | RING/U-box | 29 | 85 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo9g00179 | Pumo-Chr9 | 2469685 | 2471906 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo9g00179 | 16 | 210 | C3H Transcription Factor Family | AT1G19310 | 65.550 | 7.48e-86 | 252 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo9g00179 | K10666 | - | gmx:100527488 | 377.867 |