Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00149 ATGTTTCATCGCTGGAGCAATTCTCCTCAACAAGATCAGGAAAGCAGTGAGCTATATGCTGAATCCAAGATTAAAGAGCTGAAGGGTGCAATTGGACCCTTATCAGGACACAGTTTGATGTATTGTACTGATGCATGTTTTAAGAGATATTTGGAAGCTCGAAACTGGAATGTAGACAAGTCCAAGAAGATGTTGGAGGAGACACTCAGGTGGAGGTCAACCTATAAGCCAGAGGAAATTCGCTGGCATGAGGTTGCAATGGAAGGGGAGACTGGGAAATTGTATAGAGCAAGTTTTCATGACAGGCAAGGAAGGACTGTTCTCATTTTGAGACCTGGAATGCAGAACACTACTTCAATGGAGAATCAGATGCGGCATCTTGTGTATCTTTTGGAAAATGCCATGCTTAACCTTCCCCCGGGTCAAGACCAAATGGCATGGTTGATAGACTTCACTGGATGGTCAATAACCAACAATGTGCCCCTTAAATCAGCCAGAGAGACCATCAACATTTTGCAGAATCATTACCCTGAGAGGCTTGGCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCTACCCAAAAAATAAAGATAGTGTGGAGCTCATGAAGTCCTATTTTGATGAGGAAAATCTTCCCAAAGAACTAGGTGGAAAAAGCATAATGAGTTATAACCATGAGGAGTTCTCCAGATTAATGGTTCAGGATGATTTGAAATGTGCAGCATTTTGGGGATCTGATGAGAAGCTCTCAAACCACATTGCTAACGGGCATTCCGCAGCAGTTTGCAATGAAACCCCACCTGAGGCATGCTAA 882 0.4274 MFHRWSNSPQQDQESSELYAESKIKELKGAIGPLSGHSLMYCTDACFKRYLEARNWNVDKSKKMLEETLRWRSTYKPEEIRWHEVAMEGETGKLYRASFHDRQGRTVLILRPGMQNTTSMENQMRHLVYLLENAMLNLPPGQDQMAWLIDFTGWSITNNVPLKSARETINILQNHYPERLGIAFLYNPPRVFEAFWKIVKYFLDNKTFQKVKFVYPKNKDSVELMKSYFDEENLPKELGGKSIMSYNHEEFSRLMVQDDLKCAAFWGSDEKLSNHIANGHSAAVCNETPPEAC 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00149 293 SMART sec14_4 88 243 IPR001251 -
Pumo9g00149 293 Pfam CRAL/TRIO, N-terminal domain 25 67 IPR011074 -
Pumo9g00149 293 SUPERFAMILY CRAL/TRIO domain 82 253 IPR036865 -
Pumo9g00149 293 Gene3D - 4 273 IPR036865 -
Pumo9g00149 293 Pfam CRAL/TRIO domain 93 240 IPR001251 -
Pumo9g00149 293 SMART CRAL_TRIO_N_2 43 68 IPR011074 -
Pumo9g00149 293 SUPERFAMILY CRAL/TRIO N-terminal domain 21 84 IPR036273 -
Pumo9g00149 293 FunFam Phosphatidylinositol transfer protein 3 3 275 - -
Pumo9g00149 293 PANTHER GH16843P 10 272 - -
Pumo9g00149 293 CDD SEC14 100 241 IPR001251 -
Pumo9g00149 293 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 246 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00149 Pumo-Chr9 2040273 2041930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00149 49 235 Acyl Lipid Metabolism Gene Families AT5G47730 27.805 1.40e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00149 K26544 - gmx:100790867 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00149 9 2040273 2041930 Pumo9g00149 9 2040273 2041930 ECH