Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00134 ATGAGCTGGAGAACCCTAGCTTCCACTTCAAGACACACATTCAAGAGACTCAATGCAATCCTACGATCCCCTTCTTCTTCAATCCACCCACGCGCCCTCATCCTCCACGCGCCCTTCTCCACCACCACCCTCCTCCATTCCCCTAAACCCACCAACGCCCTCGTCCTCCACGCGCCGCAAAACGACGCCGTCCTCGAAACCACGAACGAGTTCCTCTCGCGATTCGTCTGGATAATGCGGAAGAAGGTGAAGGAAGCCTACCCGGACTCCGACAGGGCCACCGTCGACGGCATGCTCGTCGCCATTGTCGAGAGGGTCGTCTCGGAAATGGAAAGGGGCGGCATCGAAACGACGTCGTTTCGTTCAGCGGATTTCAGCGAGGATTTGTGGAGAACGGTGTGGGAGGTGAGCAATTTGGTTTTGGAGGACATGAACAAGGAGAGCAAGAAGGAGAAGATGAAGGGCTTCCTGCAGTGCGAGGAGGTTAAGGAAATGTGCCGATTTGCCGGCGAAGTCGGCATTCGCGGCGATTTGCTCAGGGAGCTCAGGTTCAAGTGGGCGCGTGAGAAGATGGAGGAGCATGAATTCTATGAGGGTTTGGAGAGAATGAGGAAAGAGGCACAAAGTGAGGGCAATGAAATTGATGTCACTAATAAGAAGGAGAAGGTTGCTGTTGGACTTCCCAAGAGGAGAGGGAAGATAAGGTACAAGATTTATGGGCTTGATCTCTCTGATCCCAAGTGGGCACAAGTGGCTGACAGGATCCATGAGGCAGAGCAGGTGTTTTGGCCGCAGGAGCCGAAGCCGATTACCGGGAAAGCGAAGATTGTTACCGTGAATATTCTGTCGTTGAACGAGGCGGAGGAGGATGGTTTGCAAAGCCTGTTGGCTGAGTGGGTGGAGCTTGTACAACCCTGCAGGGTGGAATGGATGGATTTGCTTGACAAATTGAAAGAGCAGAATCCTGGTTTGTACTTGAAGGTGGCTGAAATGGTATTGGCTAAAGATTCTTTCCAAACAAATGTATCTGACTACACTAGGCTTATTGATATCTATGCTAAAGAGAACTGCTTTGATGATGTTGAGAGAATGTTAAAGAAGATGAATGAAAATGGTCTAGAACCAGATGCTTCAATAGCCAGTACGTTGGTCCACATGTACTGCAAGGGAGGCAATCTTGCACGTGCAAATGAAGCATTTGAAGTCTTGATGAGCCTCGGCTTCCAACCGGACGCACAAGTCTACAACTCAATGATCATGGCCTTTGTGAATAATGGCCAGCCTAAGTTGGGCGAGAAACTGATGAGGGACATGGATGATAGACAGATTACAATCACAAAGGAAATATACATGGCATTGCTCCGTTCTTTTTCTCAACTTGGTGATGCTGTAGGAGCCGAACGAATTTCAACAACTATGCAGTTTGCAGGATTCCAGCCGACGAGTATGGAGACATGCACCCTGCTCATTGAGGCAAATGCACTTGCTGGGAACCCTGATCAGGCAAGAAGCCATTTTGACTACATGATAAAACATGGGCATAGGCCTGATGATAGGTGCACTGCTAGCATGATTTCAGCTTATGAGAAGAAAAACTACTTGGACAATGCTTTAGCTCTTATATTGGATTTAGAGAAGGATGGGTTTGAGCCTGGGGTTGCCACTTATTCTGTTCTTGTGGACTGGTTGGGTAAGTTGCAGCTTGTTGATGAGGCTGAGCAGCTTTTAGGCAAAATAGCTCTGCTGGGCGAGGCTCCTCCCTTTAAGCTTCAAGTGAGTCTTTGTGATATGTATGCAAGGGCTGGAAATGAGAAAAAGGCTCTTCAAACTCTAGGTGTTCTGGAAGCTAGGAAGGATGAATTAGGACAAGCTGAGTTTGAGAGAATTATAAGTGGCCTTATTGATGGCGGGTTTCAGCAGGATGCACAAAGAATATGTGGGATCATGGAGGCACGGGGTTTTGATGCATCAAGGGTTAAGTTTAAACTTTTGAAACCTGTCTCCAGAGCACCGAGTATGAGATAG 2025 0.4835 MSWRTLASTSRHTFKRLNAILRSPSSSIHPRALILHAPFSTTTLLHSPKPTNALVLHAPQNDAVLETTNEFLSRFVWIMRKKVKEAYPDSDRATVDGMLVAIVERVVSEMERGGIETTSFRSADFSEDLWRTVWEVSNLVLEDMNKESKKEKMKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLERMRKEAQSEGNEIDVTNKKEKVAVGLPKRRGKIRYKIYGLDLSDPKWAQVADRIHEAEQVFWPQEPKPITGKAKIVTVNILSLNEAEEDGLQSLLAEWVELVQPCRVEWMDLLDKLKEQNPGLYLKVAEMVLAKDSFQTNVSDYTRLIDIYAKENCFDDVERMLKKMNENGLEPDASIASTLVHMYCKGGNLARANEAFEVLMSLGFQPDAQVYNSMIMAFVNNGQPKLGEKLMRDMDDRQITITKEIYMALLRSFSQLGDAVGAERISTTMQFAGFQPTSMETCTLLIEANALAGNPDQARSHFDYMIKHGHRPDDRCTASMISAYEKKNYLDNALALILDLEKDGFEPGVATYSVLVDWLGKLQLVDEAEQLLGKIALLGEAPPFKLQVSLCDMYARAGNEKKALQTLGVLEARKDELGQAEFERIISGLIDGGFQQDAQRICGIMEARGFDASRVKFKLLKPVSRAPSMR 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00134 674 NCBIfam pentatricopeptide repeat 381 412 IPR002885 -
Pumo9g00134 674 NCBIfam pentatricopeptide repeat 345 377 IPR002885 -
Pumo9g00134 674 NCBIfam pentatricopeptide repeat 414 443 IPR002885 -
Pumo9g00134 674 PANTHER OS07G0661900 PROTEIN 78 662 - -
Pumo9g00134 674 Coils Coil 200 220 - -
Pumo9g00134 674 Pfam Pentatricopeptide repeat domain 365 425 IPR002885 -
Pumo9g00134 674 Gene3D Tetratricopeptide repeat domain 308 464 IPR011990 GO:0005515
Pumo9g00134 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Pumo9g00134 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Pumo9g00134 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Pumo9g00134 674 Pfam PPR repeat 523 549 IPR002885 -
Pumo9g00134 674 Pfam PPR repeat 485 513 IPR002885 -
Pumo9g00134 674 Pfam PPR repeat 555 579 IPR002885 -
Pumo9g00134 674 Gene3D Tetratricopeptide repeat domain 465 671 IPR011990 GO:0005515
Pumo9g00134 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00134 Pumo-Chr9 1912679 1915426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00134 338 664 Glycosyltransferase AT1G05670 26.911 6.12e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00134 - - gmx:100794017 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00134 9 1912679 1915426 Pumo9g00134 9 1912679 1915426 ECH