Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00094 ATGAAGATCCTGTGCGACGTGTGCAACAAACACCAGGCCTCCCTCTTCTGCACCGCCGATGAAGCCGCCCTCTGCGACGCCTGCGACCACCGCGTCCACCATGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCTTCTCCCCCTAACCCTAAACAACACCCTCTCTGCGATATTTGCCAGGAGAGAAGAGCCTTCATGTTCTGTCAGCAAGACAGGGCGATTCTCTGCAAAGACTGTGACGTGTCAATTCACTCAGCCAACGAACACACCCTTAAGCACGATAGGTTCCTTCTCACTGGTGTTAAACTCTCTGCTTCTCCCATGCTTCGTTCATCACAAACTACCTCCGATTCAAACTCAACCCCTTCTCTTGTCAACGTTCCACTACATCAAACAACAACACTACCTCCATCTTCCTCCACCACCACCAAGGTTGCTGTTGAAGGAACTGGTTCAACAAGTGCTAGCAGCATATCGGAGTATTTGATTGAGACTCTTCCTGGCTGGCAGGTTGAGGACTTTCTCGATTCATATTCTGTTCCCTTTGCTTTCTCTAAGAGTGATGAGATGTTGCCACGGTTTGATGCTGACGTGGAGGGGCATATGGGTTCGTTCTCGACCGAGAACATGGGGATCTGGGTTCCTCAAGCGCCACCACCACCTCTTGTGTGTTCTTCACAAATGGATCGGGTGATTGGTCACGGTGAGAACAACAACATCAAAGGTAGCAGCAGATCGAGGTTGAAGGATGATAATTTCACTGTTCCACAGATTAGTCCTCCCTCCAATTCCAAGAGAGCCAGATTTCTATGGTAG 831 0.5018 MKILCDVCNKHQASLFCTADEAALCDACDHRVHHANKLASKHQRFSLLRPSPPNPKQHPLCDICQERRAFMFCQQDRAILCKDCDVSIHSANEHTLKHDRFLLTGVKLSASPMLRSSQTTSDSNSTPSLVNVPLHQTTTLPPSSSTTTKVAVEGTGSTSASSISEYLIETLPGWQVEDFLDSYSVPFAFSKSDEMLPRFDADVEGHMGSFSTENMGIWVPQAPPPPLVCSSQMDRVIGHGENNNIKGSSRSRLKDDNFTVPQISPPSNSKRARFLW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00094 276 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo9g00094 276 MobiDBLite consensus disorder prediction 254 269 - -
Pumo9g00094 276 Gene3D Classic Zinc Finger 1 98 - -
Pumo9g00094 276 FunFam B-box zinc finger protein 21 1 101 - -
Pumo9g00094 276 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 268 - -
Pumo9g00094 276 CDD Bbox1_BBX-like 4 47 - -
Pumo9g00094 276 MobiDBLite consensus disorder prediction 238 276 - -
Pumo9g00094 276 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pumo9g00094 276 Pfam B-box zinc finger 57 96 IPR000315 GO:0008270
Pumo9g00094 276 SMART bboxneu5 56 103 IPR000315 GO:0008270
Pumo9g00094 276 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pumo9g00094 276 CDD Bbox1_BBX-like 60 103 - -
Pumo9g00094 276 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00094 Pumo-Chr9 1421917 1423467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00094 1 276 C2C2-CO-like Transcription Factor Family AT1G75540 46.084 2.64e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo9g00094 zf-B_box 7.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00094 - - gmx:100807827 478.404