Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00045 ATGGTTACCACTGCTAAATCTTCAAACCACCACTCGCCGCCTAGTGCTCCGTCACCGGCGCAGCCCGACGACGGCAACAGCCCTAAGTTCCCGCGAAAAAATCTTCCCTCGCCGTGGGCTCAGGTCGTTCGCGGCGGCGAGCCGGAATCGGCGGGCGGCATTCAGCAATCGTCGCCGTCGTCGTCGTCGTCGTCGTCGTCCCTGGCTGCTGACCAAGCCCCGTCATCGGAGGTGGTTCCGGCGTCGTCGCCTGTGGATAATTCTAATACGGTTGGTGTTGTAGATAGCTCCGATGGTAATGAGGGCAATGCGGATCGTTCTAAGAAGCCCGTTTGGAACAAATCCTCAAACGGCGTCGTCGAGACTGGGCCTGTAATGGGCGCTTCTGAAGCATGGCCCACTTTGTACGCGTCCACCAAAGGTTCTGCTAAATTGCCACCTGAATCGTCCTCCAAGACTGTTACCGATGGATCACTCTCCACTTCTCAGGGGCCAATGACCTCACAATCTCCTCAGAAACAAGCTACTACTAGTGCTACTACTAATGCAAAACCTAATTCGGCACCAAATTATAATGTGCCTAGTAGACAAAGATCGATGAAACGGGTAGGTGGCAGCAGCATTGGGTCTGGTCCTTCACAGAGCAACTTCTCCAACCCTCCCCCACCACCGCCACCCCCACCTTTTCCTGTATACCAGCTCCCACCAGTTAGCTATGGTAATATGGTACCAGGGGTCCCTGACCCTGCTCCAAGAGATCATTACCGGAATAATAACTGGGATGCAAGACCAATGGTAGGGGGTTTTGTGCCTGCAATGAATGAATATCGAGGTTCCTCTCGTAGGGGTTATTTTGGGCCTCATCCACGAGGAGATGGTTCCTATCATAATAGTTATGGTAGCAGGCGTGATCATCAAGATCGTGGAAATTATGTGAATACTAGAGATGCTTTTGTACCTCAACCAAGGATGCCTCCAAGAGGATTACTGAGGCACCCACCACCTAGTACTGCTGCATTTGTGGCCCCTCAGCCTATTGGACCATTTGGTAACCCCATTGGTTTTCCTGAGTTCTATTACTATCAACCAGTAACAGTGGAACAGTTTACGGGTATGCCGTTCTTCACTCACAGCCCTCCTCCTACAACGTTCTTCTCTGCTGCAGAATCTCCTCTCTCTAATATGATAGTCCATCAAATTGAATATTATTTTAGTGATGCTAATTTAGTGAGAGATGAGTTTTTAAGGTCTAAAATGGATGAACAGGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTTAGAAGTTTGACAACCAACATTCAGTTGATACTGGATTCTCTGAGAACTTCCACTGTTGTGGAGGTGCAGGGTGATAAGTTGAGGAGACTTAATGAGTGGAGGAGATGGCTGCACTCTGCCCAGCAACGGTCTGATTCTGGTTCAATATCTCCTGGTGGATCAAGATACAATAACCTGGCTACTAATTTTCAAACTATCACCTTGGAAGAAACAACTAAAGATGAAGGTCCAACAGAGTCTCGCAGTCAGTCTCAACTCCTAAATGGTGGTGATACTTAA 1587 0.4902 MVTTAKSSNHHSPPSAPSPAQPDDGNSPKFPRKNLPSPWAQVVRGGEPESAGGIQQSSPSSSSSSSSLAADQAPSSEVVPASSPVDNSNTVGVVDSSDGNEGNADRSKKPVWNKSSNGVVETGPVMGASEAWPTLYASTKGSAKLPPESSSKTVTDGSLSTSQGPMTSQSPQKQATTSATTNAKPNSAPNYNVPSRQRSMKRVGGSSIGSGPSQSNFSNPPPPPPPPPFPVYQLPPVSYGNMVPGVPDPAPRDHYRNNNWDARPMVGGFVPAMNEYRGSSRRGYFGPHPRGDGSYHNSYGSRRDHQDRGNYVNTRDAFVPQPRMPPRGLLRHPPPSTAAFVAPQPIGPFGNPIGFPEFYYYQPVTVEQFTGMPFFTHSPPPTTFFSAAESPLSNMIVHQIEYYFSDANLVRDEFLRSKMDEQGWVPVTLIADFPRVRSLTTNIQLILDSLRTSTVVEVQGDKLRRLNEWRRWLHSAQQRSDSGSISPGGSRYNNLATNFQTITLEETTKDEGPTESRSQSQLLNGGDT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00045 528 Gene3D - 385 473 IPR036388 -
Pumo9g00045 528 CDD LAM 394 465 - -
Pumo9g00045 528 ProSiteProfiles La-type HTH domain profile. 386 475 IPR006630 -
Pumo9g00045 528 PANTHER LUPUS LA PROTEIN-RELATED 130 477 IPR045180 -
Pumo9g00045 528 MobiDBLite consensus disorder prediction 504 528 - -
Pumo9g00045 528 MobiDBLite consensus disorder prediction 514 528 - -
Pumo9g00045 528 Pfam La domain 396 451 IPR006630 -
Pumo9g00045 528 SMART la 390 466 IPR006630 -
Pumo9g00045 528 MobiDBLite consensus disorder prediction 1 228 - -
Pumo9g00045 528 MobiDBLite consensus disorder prediction 51 97 - -
Pumo9g00045 528 MobiDBLite consensus disorder prediction 143 215 - -
Pumo9g00045 528 FunFam la-related protein 1B isoform X2 382 472 - -
Pumo9g00045 528 MobiDBLite consensus disorder prediction 283 309 - -
Pumo9g00045 528 SUPERFAMILY "Winged helix" DNA-binding domain 386 474 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00045 Pumo-Chr9 632709 637057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00045 K18757 - gmx:100785504 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00045 9 632709 637057 Pumo9g00045 9 632709 637057 ECH