Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00038 ATGCTCGATTCCGTTCTTCTGGCGCTCTTCTTGCCCTGCCTCGGCATGAGCGCCGTTTTCATTGTCTACATGTGCCTTCTCTGGTACGCCACCACCCACCACTCTGACCTCGCTCTACCGGCCAAGCCCGTCTCCGACACCGGCCTCTCCCCTTCCCAGCTCGACAAATTGCCTAGAATCACCGGAAAGGACCTTCTCATGGGAGCCGAATGCGCCGTCTGCCTCGACGAGATCGGCACCGACCAACCGGCTCGACTGGTTCCCGGTTGCAACCACGCCTTCCATTTGGAATGCGCCGACACCTGGCTCTCTAAGCACCCTCTCTGCCCCCTCTGCAGAGCCAAACTCGACCCTACGCTTTTCTCTTCCTCAGAAAATCCATGCTGA 387 0.5891 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHHSDLALPAKPVSDTGLSPSQLDKLPRITGKDLLMGAECAVCLDEIGTDQPARLVPGCNHAFHLECADTWLSKHPLCPLCRAKLDPTLFSSSENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00038 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 124 - -
Pumo9g00038 128 Pfam Ring finger domain 70 113 IPR001841 -
Pumo9g00038 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Pumo9g00038 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 119 IPR013083 -
Pumo9g00038 128 SUPERFAMILY RING/U-box 70 118 - -
Pumo9g00038 128 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00038 Pumo-Chr9 538767 539153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00038 1 128 C3H Transcription Factor Family AT5G42200 50.735 3.19e-43 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00038 K19037 - gmx:100817919 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00038 9 538767 539153 Pumo9g00038 9 538767 539153 ECH