Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00035 ATGGGAGTGGGGTTCTCTAAGGTGTTAAGGCAGAAACCAGACCATGAAATTCCCATTGCCTGCCCAGATTACATTCCTCAACTCACCTACAATCAACCAAGGAAAAACCTCCTAATTCCACCTCCACTTCCTCCTCCTAAGCCTACCGAATTATGCTGTTCACAAACAGAACCAGTTCTAAGGAAACCTTACGTTAAAATAAAGCAAATGTACGAGATGAAGGAAGAGCTGGGAAGAGGTAAATTTGGGGTGACTTATTTGTGTGTAGAGAAGGCCACAGGACGAGCATATGCATGCAAATCCATAGCAAAGAAGAGGCCGCGAGAAATATCAGAGGATGTTAGAAGAGAGGTTATGATTCTGCAGCATCTTTCGGGGCAACATAACATTGTGGAATTCAAGGGAGCTTATGAGGACAGAAAGAACGTGCATCTTGTGATGGAGTTGTGCAGTGGGGGTGAACTCTTTGACCGCATTGTTGAAAGAGGGCACTACTCGGAGCGTGAAGCAGCCACAATCATGAGACAGATTGTGAATGTGGTTCACGTCTGCCATTTCATGGGTGTCATGCATCGAGACCTCAAGCCAGAGAATTTCTTGTTCACCACCAAGGACGAGGATGCCCCATTGAAACTCACCGATTTTGGATCCTCTGTCTTCTTTGACAAAGGTAAAGTGTACACAGATATTGTTGGAAATGCATATTACGTGGCTCCAGAGGTTTTGAAACGGAGTTATGGAAAGGAGATAGATGTCTGGAATGCAGGAGTCATTTTGTGCATCCTCTTAAGTGGGGTGCCTCCATTTTGGGCTGAAACCGAGAAAGGCATATATGATGCTATTTTGGGAGGAAAGTTAGATATGGATAGCGAGCCATGGCCTTCTATTTCGGATGCAGCAAAAGATTTGGTCAGAAAAATGCTGACTTATGACCCTAAGAAACGCATTACAGCTGCTGATGCCCTTGAACACCCTTGGTTGAAGGAAGGTGGTGAAGCATCAGACAAGCATCTAGACAGTGCTGTTTTAATTAGGATGAAACGGTTTAGAGCAATGAACCAGATGAAGAAGCTTGCTTTGAAGGTAATAGCAGAAAGTCTTTCAGAGGAAGAAACAAAGGGCCTGAGACATATGTTCAACAATATGGATACTGATGGCAGTGGCACAATCACATTTGAAGAACTCAAATCTGGATTGTCCAGATTGGGTTCCCAGGTTAATGAATCTGAAATGAAGCAGCTAATGGAAGCTGTTGATGTTGACAAGAATGGGACTATTGACTACTGTGAATTCTTTGCTGCCACTATGGATCGGTATAAACTGGAGAAGGGAGAGATTTTGTATAAGGCTTTTCAATACTTTGATAAGGATGACATCGGTTATATAACAAGAGATGAACTCAGAGAAGCAATAACTGAACACCAAAATGGAGATGAAGCTGCTATAGATAAAGTCTTCCACGACGTTGATTCTGACAAAGACGGGAAAATTAATTATGTCGAGTTTATGACCATGATGAGAAACGAATGCTGA 1533 0.4286 MGVGFSKVLRQKPDHEIPIACPDYIPQLTYNQPRKNLLIPPPLPPPKPTELCCSQTEPVLRKPYVKIKQMYEMKEELGRGKFGVTYLCVEKATGRAYACKSIAKKRPREISEDVRREVMILQHLSGQHNIVEFKGAYEDRKNVHLVMELCSGGELFDRIVERGHYSEREAATIMRQIVNVVHVCHFMGVMHRDLKPENFLFTTKDEDAPLKLTDFGSSVFFDKGKVYTDIVGNAYYVAPEVLKRSYGKEIDVWNAGVILCILLSGVPPFWAETEKGIYDAILGGKLDMDSEPWPSISDAAKDLVRKMLTYDPKKRITAADALEHPWLKEGGEASDKHLDSAVLIRMKRFRAMNQMKKLALKVIAESLSEEETKGLRHMFNNMDTDGSGTITFEELKSGLSRLGSQVNESEMKQLMEAVDVDKNGTIDYCEFFAATMDRYKLEKGEILYKAFQYFDKDDIGYITRDELREAITEHQNGDEAAIDKVFHDVDSDKDGKINYVEFMTMMRNEC 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00035 510 SMART efh_1 481 509 IPR002048 GO:0005509
Pumo9g00035 510 SMART efh_1 410 438 IPR002048 GO:0005509
Pumo9g00035 510 SMART efh_1 446 474 IPR002048 GO:0005509
Pumo9g00035 510 SMART efh_1 374 402 IPR002048 GO:0005509
Pumo9g00035 510 Pfam EF-hand domain pair 447 507 IPR002048 GO:0005509
Pumo9g00035 510 Pfam EF-hand domain pair 375 435 IPR002048 GO:0005509
Pumo9g00035 510 ProSiteProfiles EF-hand calcium-binding domain profile. 406 441 IPR002048 GO:0005509
Pumo9g00035 510 SUPERFAMILY EF-hand 367 506 IPR011992 -
Pumo9g00035 510 FunFam Calcium-dependent protein kinase 1 335 510 - -
Pumo9g00035 510 Gene3D Phosphorylase Kinase; domain 1 73 154 - -
Pumo9g00035 510 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Pumo9g00035 510 Gene3D - 368 436 - -
Pumo9g00035 510 SUPERFAMILY Protein kinase-like (PK-like) 58 350 IPR011009 -
Pumo9g00035 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Pumo9g00035 510 ProSitePatterns EF-hand calcium-binding domain. 419 431 IPR018247 -
Pumo9g00035 510 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Pumo9g00035 510 FunFam Calcium-dependent protein kinase 1 73 154 - -
Pumo9g00035 510 ProSiteProfiles EF-hand calcium-binding domain profile. 442 476 IPR002048 GO:0005509
Pumo9g00035 510 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 499 - -
Pumo9g00035 510 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524
Pumo9g00035 510 Gene3D Transferase(Phosphotransferase) domain 1 155 345 - -
Pumo9g00035 510 Gene3D - 346 506 - -
Pumo9g00035 510 SMART serkin_6 71 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00035 510 CDD STKc_CAMK 71 326 - -
Pumo9g00035 510 Pfam Protein kinase domain 71 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00035 510 FunFam Calcium-dependent protein kinase SK5 155 339 - -
Pumo9g00035 510 ProSiteProfiles Protein kinase domain profile. 71 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00035 510 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Pumo9g00035 510 ProSiteProfiles EF-hand calcium-binding domain profile. 477 510 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00035 Pumo-Chr9 499944 503752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00035 40 508 EF-hand Containing Proteins AT4G04720 65.553 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo9g00035 Pkinase 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00035 K13412 - gmx:100792610 879.396