Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00019 ATGGCGAGTCAGTCCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAATGTTCAGATTCAACTGTTCAGCTCAATATCAAGACTCTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCTGTTTCATTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCGGTTAATCAGCAACGGCTGATATTTAGAGGGAAGGTCTTAAAGGATGAACACGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGTCGCAGGCTTCTGGTACGAGTTCTGGTGAGTCAACTGGTGCAAGTGGTAACCGAGGAAATGATGTAGGCTCAGGGGCTCCTCGTAATCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGAACATTTAATGTGGGGGAACAAGGTGAAGGAATTGTTCATGACCTCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGTGGCCAGAGCACAATTAGTGGTCCTAATGCCATGCAAACTTCTTCAGTTCACCCAAGGAATGAAACTGAAGGAATGAATGCTGGAAATCAAAACCCAGCAGGAAATCAGGCACCATCTGGACAGACATTTCATGGCCCGACATTCCAATCTGTGTCTCATGTTGTTCAGATTCCTGTGGCGGCAGGGGCCATACCCCTTCCTTCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGTCTGAGTTTATGAATCGCATGGAACAGACACTAACACAAAATGGTTATCAATCAAATCTTTCATCAGCTAACCCTGGAGATCAGCGAGTGGAATTGCCTTCTAATGCACAAGGGTTGCCGACACTTGAAGCATTAAGCGCTGTCTTGCATCGCACAGAACGGTTACTTGGTGGTCAAGCTGTTGCTGCACTATCTCATATTGCAGGGCGCTTGGAAAGAGAAGGAACTTCTGCTGATCTACATATAAGGGGTCAAATACAGTCAGAGTCAGTGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGTTGACACTGCGTATGGGACAGTCTTCTGCAGAATCTGTTGTTAACGCTGGACCAGCAGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGTGCAGCCTTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGTCCAGTTCCCTCCTCAACTCCTACAACTTTAGGCACCATTGGTATTGGAAATGCTCCTAGGAACGTAAACATTCATATACATGCTGGTACCTCTCTTGCACCAATTGTTTCAGCAATTGGTTCTAGGGCAAATAATGGAGAGGGGACAAGAAGTGAACACCGTAATGAGCCTAGCTCTGGTGATTCAGGTTCAACACGGGTATTACCTGTTAGAAATGTCATAGCAGCAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACACAAACTGGGTTTGGTATTTCTACTTCACAGCCACCTTCTGATTCAGCTTCATTATCATCTGTTTTAGCTGAAATCAATTCTCGCCTTAGAAACGTTGTTGGTAATATGCAAGGAGATAACACAGTTCCATCAGGTCAAATGGAATCAAACAGCAGGGACTTGTCTTCTGGATCTGAATCAAGACCTGCTACAGTAAATGAACAGCGAGATACCGTGGACATGAATGGTTTTGGGGCTGCCAGTGCTTCCTCAGCTGGCTGCACTTCTGAAAGTGAAGTACAGAAGCTCCAAACTGAGGCAGTCCAAACCTCAAGTAATGATGAGAGAGATGTTTTGGTTGACAAATTTGTTTCAAGTTCTTCCAACCAAGATTTACAAAGTTCTTCTAGTGGAGAAACAATAGTAAAACCAGAAAAAGAACAAGATGTTCCAGCTGTAAGTGAAAGACAAAGTGTAACTGAACCTGCCAAAGCTGCTCCACTAGGATTGGGTGTGAGTGGTTTAGAGCGCAAGAGGCGAACTAGACTTCAACCTCCTGTAAGTAAAGGTGCTGATGATGGATCATCCAGTTCTTCTGTCAATCAAAATCAGCAAACGAGAACAGATGGTCAACATATATTGCAAACTCTTGCAAGTCATGGATCTGGTTTGAATTCAAGAAATGCTAATGGGCCATCCCAGCGGCCATTGCCCTCCAGTGATCAGCCGATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACATAGTCCTGCCTTGAATGGTTTGTTGGAAGGAGTTTCACAGCAAACAGGAGTTGACTCTCCTGATGGCTTGAGGAATATGTTGCAGCAGTTCACGCAGAGCCCACAGCTGATGAACACGGTTAATCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTACTGGAATGGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCGAGCCCTTGGTGGGGGAAATCCTTCCTCACTATTCTCTGCTGAAGAAGCAGAACCCCGTACACCCTACCGAGATGGAACAGTTAACAGAGATGAATATTCTGATAATCAAAGTTTACAGCTTGACCTTCAACCACTGGCTGAGAGGATTGAGCACCTGGGTCCTTCTACAGATATTTTCCGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCAGTGGAAGCACTTCTAATGATCTTCTGGATGAGTTATGCAGCAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCAATGTGATGCAAGTAAGCTGCTCGAGGGACATTCTGAGCCGGACAAATTCTAA 2823 0.4442 MASQSSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVDKNMPVSLFKEKIANEIGVPVNQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQASGTSSGESTGASGNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTISGPNAMQTSSVHPRNETEGMNAGNQNPAGNQAPSGQTFHGPTFQSVSHVVQIPVAAGAIPLPSLNAPIPDSLNTLSEFMNRMEQTLTQNGYQSNLSSANPGDQRVELPSNAQGLPTLEALSAVLHRTERLLGGQAVAALSHIAGRLEREGTSADLHIRGQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPVPSSTPTTLGTIGIGNAPRNVNIHIHAGTSLAPIVSAIGSRANNGEGTRSEHRNEPSSGDSGSTRVLPVRNVIAATIPSHPPGVGVSSSTQTGFGISTSQPPSDSASLSSVLAEINSRLRNVVGNMQGDNTVPSGQMESNSRDLSSGSESRPATVNEQRDTVDMNGFGAASASSAGCTSESEVQKLQTEAVQTSSNDERDVLVDKFVSSSSNQDLQSSSSGETIVKPEKEQDVPAVSERQSVTEPAKAAPLGLGVSGLERKRRTRLQPPVSKGADDGSSSSSVNQNQQTRTDGQHILQTLASHGSGLNSRNANGPSQRPLPSSDQPIDVAGLMSQALHSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFTGMERGQGGGIDISRMFQQMMPIVSRALGGGNPSSLFSAEEAEPRTPYRDGTVNRDEYSDNQSLQLDLQPLAERIEHLGPSTDIFRAVAENAVQLSGSGSTSNDLLDELCSNESLAREYVDMLQCDASKLLEGHSEPDKF 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00019 940 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 938 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 168 215 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 488 515 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 446 515 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 710 729 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 679 696 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 530 696 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 832 852 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 611 630 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 530 603 - -
Pumo9g00019 940 CDD Ubl_ubiquitin_like 26 93 - -
Pumo9g00019 940 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Pumo9g00019 940 MobiDBLite consensus disorder prediction 93 118 - -
Pumo9g00019 940 SUPERFAMILY Ubiquitin-like 19 98 IPR029071 -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 710 733 - -
Pumo9g00019 940 MobiDBLite consensus disorder prediction 93 128 - -
Pumo9g00019 940 PRINTS Ubiquitin signature 76 97 IPR019956 -
Pumo9g00019 940 PRINTS Ubiquitin signature 55 75 IPR019956 -
Pumo9g00019 940 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Pumo9g00019 940 Gene3D - 13 108 - -
Pumo9g00019 940 SMART ubq_7 24 95 IPR000626 GO:0005515
Pumo9g00019 940 FunFam Large proline-rich protein BAG6 16 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00019 Pumo-Chr9 340731 350768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00019 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 5.49e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00019 - - gmx:100783611 1624.37