Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00016 ATGAGTAGTTGGGAAAGTAAGAAGGCGAATCAAGAGATGGAGGAGAAGCACGTAGACCCAAGAAGCGGTTTCTGCAGCTCCAATTCAATATTCTACAGCAAGCGTAAGCCCCTCCCACTCCCTCCTAACAGCGCCTTAGACGTCACCACCTTCATCTCCTCCCGCGCCCACCGCGGCACCACCGCGTTCATCGACGCCGCCACCGGCCGCCACCTCACGTACACCCAGCTATGGCGAGCGGTCGAGGGCGTGGCAGCCTCTCTCTGGGACATGGGGATCCGAAAGGGCAACGTGGTCCTCATCCTCTCTCCCAACTCCATCCACTTCCCGGTGGTCTGCCTCGCCGTCATGTCCCTCGGCGCCATCATCACCACCACCAACCCCCTGAACACCACGCGCGAAATCGCCAAGCAGATCGCCGATTCCAAGCCCCTCCTCGCCTTCACAATCCCTCCTTTACTCCCTAAAATCACCGGAGCAGCGCCCTCTCTACCAATCGTTCTCATGGAAAAGGACAAGGACAAGCACGCCAATATTGTCACCACGCTTGAGGAGATGGCGAAGAAGGAACCCGTGGCCCAGCGCGTGAGGGAGCGCGTGGAGCAGGAGGACACGGCGACGCTGCTCTACTCCTCGGGCACGACGGGACCCAGCAAGGGCGTTGTTTCGTCCCACCGGAACCTGATAGCGATGGTCCAAATCGTGCTGGGTCGGTTCCACATGGAAGAGAACGAAACGTTCATCTGCACGGTCCCCATGTTTCACATATACGGTCTGGTGGCCTTCGCGACGGGGCTTCTGGCTTCGGGGTCCACCATCGTGGTGCTGTCCAAGTTCGAGATGCACGACATGCTCTCCTCGATTCAGAGGTTCCGCGCCACCTACCTCCCGCTCGTGCCCCCCATTCTGGTCGCCATGCTCAACAACGCCCACGCCATCAAGGGAAACTACGACATCACCTCCCTCCATTCGGTGCTCTCAGGTGGGGCCCCCTTGAGTAAGGAAGTCATAGATGGCTTTGTCGACCAGTACCCCAACGTCACCATCCTTCAGGGTTATGGTTTGACGGAATCCACCGGCGTTGGAGCCTCCACCGATTCCTTGGACGAGAGTCGCAGGTACGGCACGGCGGGGCTCTTGTCGCCGGCCACCCAGGCTATGATCGTCGACCCTGACTCCGGCCAATCCCTTCCGGTTAACAGCACTGGGGAGCTCTGGCTCAGGGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAAGAAGCAACCACATCAACCCTTGATTCAAAAGGTTGGTTAAGAACAGGGGATGTTTGTTACATTGACAATGATGGATTCATATTTATTGTCGATCGGTTAAAAGAGCTCATCAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCCTTGTTATTGACTCATCCTGCTATTTTAGATGCTGCTGTTATCCCGTATCCAGATAAGGAAGCTGGGCAGTATCCAATGGCATACGTGGTGAGGAAGGCTGGAACTAGCTTATCAGAAAGCCAAGTTATGGATTTTGTTGCAGGACAGGTGGCTCCGTACAAGCGGATTCGAAAAGTGGCGTTTATATCCTCCATACCCAAAAATCCTTCTGGCAAAATTCTTCGGAAGGATCTCATCAAACTCGCAACGTCTAAACTCTGA 1674 0.5532 MSSWESKKANQEMEEKHVDPRSGFCSSNSIFYSKRKPLPLPPNSALDVTTFISSRAHRGTTAFIDAATGRHLTYTQLWRAVEGVAASLWDMGIRKGNVVLILSPNSIHFPVVCLAVMSLGAIITTTNPLNTTREIAKQIADSKPLLAFTIPPLLPKITGAAPSLPIVLMEKDKDKHANIVTTLEEMAKKEPVAQRVRERVEQEDTATLLYSSGTTGPSKGVVSSHRNLIAMVQIVLGRFHMEENETFICTVPMFHIYGLVAFATGLLASGSTIVVLSKFEMHDMLSSIQRFRATYLPLVPPILVAMLNNAHAIKGNYDITSLHSVLSGGAPLSKEVIDGFVDQYPNVTILQGYGLTESTGVGASTDSLDESRRYGTAGLLSPATQAMIVDPDSGQSLPVNSTGELWLRGPTIMKGYFSNEEATTSTLDSKGWLRTGDVCYIDNDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPAILDAAVIPYPDKEAGQYPMAYVVRKAGTSLSESQVMDFVAGQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00016 557 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
Pumo9g00016 557 SUPERFAMILY Acetyl-CoA synthetase-like 40 554 - -
Pumo9g00016 557 Gene3D - 29 454 IPR042099 -
Pumo9g00016 557 Pfam AMP-binding enzyme 55 459 IPR000873 -
Pumo9g00016 557 MobiDBLite consensus disorder prediction 1 22 - -
Pumo9g00016 557 CDD 4CL 40 549 - -
Pumo9g00016 557 Gene3D - 455 556 IPR045851 -
Pumo9g00016 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 24 551 - -
Pumo9g00016 557 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Pumo9g00016 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 32 454 - -
Pumo9g00016 557 ProSitePatterns Putative AMP-binding domain signature. 208 219 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00016 Pumo-Chr9 313479 316951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00016 18 557 Monolignol Biosynthesis Gene Families AT1G20500 64.599 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00016 K10526 - gmx:100811344 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00016 9 313479 316951 Pumo9g00016 9 313479 316951 ECH