Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo97g00003 ATGCTTCCTGCGATGGTATGCCCACATAAGGATAAAACTCTCGCAAACTTACTTTTCTATTCACAAATAGAGATCACTGCCAATATGAAGCATGCTCTCAGTGATATAACCATCAAATTCCACGGTGCTACTGCCACTGTTAGTGGTAGAAGACTGCTTAGACCACAAGAGTGGGACAATCAACTCATGGAGAGGGAGTGCTTTAGAGTAATTGATGCAGATGTAATAAATGAGAACGAGAAGGAGGATCTAGAGTTACCTATGTTTGATTTGCCTACAATTAGTTATGCGACCAATAACTTTTCACCTGACAACAAACTAGGGGAAGGTGGTTTTGGAACAGTTTATAAGGGCATATTGGACAATGGAAGAGAAATAGCTGTCAAGAAGCTCTCAAAGAATTCAAGACAAGGTCTTCAGGAATTCAAAAATGAAGTTATTCATATTGCAAAACTTCAGCACAGGAATTTGGTGAGGCTGCTAGGGTACTGCATTCAAGCAGGAGAAAGATTGCTTGTTTATGAATTTATGCCCAACAAAAGCTTGGATTCCTTCATATTTGATGAAAAGAAGAGCATGTTACTAGATTGGCCTAGGCGCTTGCTCATTATCAATGGGATTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGGCATAGAATAGTTCATAGGGATCTCAAAGCTGGGAATGTTTTGTTAGATAGTCAAATGAACCCAAAAATCTCAGACTTTGGACTGGCTAGAAGCTTTGGAGGAAATGAAACTGGAGCAAATACAAATCATGTAGTTGGCACCTATGGCTATATGCCGCCAGAGTATATAATTGATGGAGCTTATTCAACAAAGTCAGATGTTTTCAGCTTTGGTGTGTTGATATTGGAGATAGTGAGTGGAAAGAGAAATAGAGGCTTCTGTCATGAAGATAATCTTCTGGCGCATGCATGGAGACTATTTACTGAAGGCAAATGCTCTGAAATAGTTGATGCAACAATAAGAGACTCACTCAATTTATCTTCAGCGCTAAGATCAATCCATGTGGGCCTACTTTGTGTGCAACTAAGTCCAGACGATCGGCCAAGCATGTCATCAGTGGTTCTGATGCTGAGCAGTGAATCTGCACTACCTCAGCCAAAATTACCTGGATTCTTCACTAATAGAAATCCGGTTGGGGACAGTTCTTCATCAAGCAGTTATAAACAATACTCAAATAATGAAATGACAGTTAGCATATTTTCTGCTAGATAG 1248 0.3982 MLPAMVCPHKDKTLANLLFYSQIEITANMKHALSDITIKFHGATATVSGRRLLRPQEWDNQLMERECFRVIDADVINENEKEDLELPMFDLPTISYATNNFSPDNKLGEGGFGTVYKGILDNGREIAVKKLSKNSRQGLQEFKNEVIHIAKLQHRNLVRLLGYCIQAGERLLVYEFMPNKSLDSFIFDEKKSMLLDWPRRLLIINGIARGLLYLHQDSRHRIVHRDLKAGNVLLDSQMNPKISDFGLARSFGGNETGANTNHVVGTYGYMPPEYIIDGAYSTKSDVFSFGVLILEIVSGKRNRGFCHEDNLLAHAWRLFTEGKCSEIVDATIRDSLNLSSALRSIHVGLLCVQLSPDDRPSMSSVVLMLSSESALPQPKLPGFFTNRNPVGDSSSSSSYKQYSNNEMTVSIFSAR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo97g00003 415 Pfam Domain of unknown function (DUF3403) 370 415 IPR021820 GO:0004674
Pumo97g00003 415 Pfam Protein kinase domain 104 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo97g00003 415 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 177 377 - -
Pumo97g00003 415 SMART serkin_6 101 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo97g00003 415 SUPERFAMILY Protein kinase-like (PK-like) 84 389 IPR011009 -
Pumo97g00003 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Pumo97g00003 415 Gene3D Transferase(Phosphotransferase) domain 1 177 377 - -
Pumo97g00003 415 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 67 176 - -
Pumo97g00003 415 Gene3D Phosphorylase Kinase; domain 1 75 176 - -
Pumo97g00003 415 CDD STKc_IRAK 107 369 - -
Pumo97g00003 415 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 411 - -
Pumo97g00003 415 ProSiteProfiles Protein kinase domain profile. 101 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo97g00003 415 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo97g00003 82 383 Receptor kinase-like Gene Family AT4G23230 58.497 2.19e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo97g00003 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo97g00003 - - gmx:100795006 590.882