Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02634 ATGGCAGAGAAAGAGAAAGAGAGATTGCTTGTGCGTTCATTCATGGGTGACGGCCCTCAAAAGGACAGGCCCTCAAACTCAAAGGGGAAGAAAGGTAGGCCACCAATACCAAAGAAGGAAAAGACTGATGTTTCTTTTGTTTGTTTGAATCTTGAACAGGCTGTGAGTCGTAATCCACAAAAAAGACGAAAGAGAGAGGGCATGGGCATTGTCATTGATGCTCCATGTAATACCCAAGCTTACCAACGTGCAAAAGAGGTTCAAGCTAACCTATCTCCTCAATTCCCAAGCCTTCTTAAGTCCATGCTTCCATCTCACGTAACTGGAGGATTTTGGCTTGGTCTTCCCACAAAATTCTGTAAGTTGCATATGTCCAAGGTTGCTACTACCATCGCTTTGGAAGATGAAAGTGGCCAACTATATGAAACCAAATATCTTGCTCAAAAGGGCGGTTTAAGTGCTGGATGGAGGGGGTTTTCCATAGCTCATAACTTACTTGAGATGGATGTTCTAATATTCCAATTGGTCCAACCTTCCAAGTTTAAGGTGTACATTATAAGATCTCAGGGATCTGATGAGGTGGATGGTGCTCTTGGCCTTCTTAAGTTAGATGAGTGCAGAAAACAAAGAGATGGAGTGAATGGTGCTCTTGATGCCACTCAAGGAAATGATCATAAGAATAGTGGGATAATGTTTGGTGCTAATGTATCTCAATCAGACCAGGTTGAAAATACTAGTAAAGATTTAGACTCGGGAATTAGATTTTCAGAATCTGTTGTGAGTTTCAAGCAAGTGACTGGTGTGGAGAATTTCAGCATTGTGGTGAATGGTTTGGTTATTGATTCGGAGCTCTCCAAATACATTCGGAGCAAGTATTATGAGCTGTGTTGCAGCCAGAGGTCATTTCTTCATGACCATCTTCTCGAGGGTCTTAACACTAAACTGGCGGCTGGAATAATTTCTGAGACCATTAATATTGCCGATGCCATTAAAGCCAGCAACCTTACAACCTCTCCAGATAATTTTGTCATATGGGACAAAACTTTGAAGGCCTTTGAGACCATGGGTATGAATGTCAGCTTCTTGCTTATTCGGCTAGACCAGCTCATGAAACTAACTTTGAAATTGAAGAGGTGCAAAGAGGTAACACTCGAAAGAGACCGCGCTGCAGAGGAGTTGAAAGCTCTAGAAGCAAAACTATTGCAAGTAAAACAAACCATAAATAGACTTGATCAAGAGAATGACATACAATATATGTACCCTGAGAGGCTGGAGACTATGTTCCAAGAACTGGCTGATGCTCCTTGGTGA 1311 0.4203 MAEKEKERLLVRSFMGDGPQKDRPSNSKGKKGRPPIPKKEKTDVSFVCLNLEQAVSRNPQKRRKREGMGIVIDAPCNTQAYQRAKEVQANLSPQFPSLLKSMLPSHVTGGFWLGLPTKFCKLHMSKVATTIALEDESGQLYETKYLAQKGGLSAGWRGFSIAHNLLEMDVLIFQLVQPSKFKVYIIRSQGSDEVDGALGLLKLDECRKQRDGVNGALDATQGNDHKNSGIMFGANVSQSDQVENTSKDLDSGIRFSESVVSFKQVTGVENFSIVVNGLVIDSELSKYIRSKYYELCCSQRSFLHDHLLEGLNTKLAAGIISETINIADAIKASNLTTSPDNFVIWDKTLKAFETMGMNVSFLLIRLDQLMKLTLKLKRCKEVTLERDRAAEELKALEAKLLQVKQTINRLDQENDIQYMYPERLETMFQELADAPW 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02634 436 ProSiteProfiles B3 DNA-binding domain profile. 98 189 IPR003340 GO:0003677
Pumo8g02634 436 SUPERFAMILY DNA-binding pseudobarrel domain 91 188 IPR015300 -
Pumo8g02634 436 SMART B3_2 98 189 IPR003340 GO:0003677
Pumo8g02634 436 CDD B3_DNA 96 187 IPR003340 GO:0003677
Pumo8g02634 436 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 69 189 IPR044837 -
Pumo8g02634 436 MobiDBLite consensus disorder prediction 1 41 - -
Pumo8g02634 436 Gene3D - 77 190 IPR015300 -
Pumo8g02634 436 Pfam B3 DNA binding domain 99 188 IPR003340 GO:0003677
Pumo8g02634 436 Coils Coil 379 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02634 Pumo-Chr8 63485904 63488061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02634 70 187 B3 DNA Binding Superfamily AT5G42700 50.847 8.29e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo8g02634 B3 6.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02634 - - gmx:100782165 604.364