Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02633 ATGTTTGATTGTGTCTCAGGCCTGTCTACCTCACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCCATTACTTTACTATATACTCTACTTTGTCAAGGGTTTGATGGCAACCCAATGGTTCGAAAGGCCATCATTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAAAAAGTGGGTTGGAGAAAGAGTTTGTCTTGTTGCTCTATGTGAAAGCACAAGAGAAGATGTTATCTCTGGGATTGACAATTTTACAAGTCCCCAAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCGTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACCGGGCATTGGCAGCTCTCCCCTGCAAACGTAGAATTTTGTTGTCAGGAACTCCCTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGCGGAAGAGAACCTGCTGCCACTGCAGAAGAGAAGAAGCTAGGTGCTGAACGCTCTGCTGAATTAAGTGTTAATGTTAACCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACACCACTACAGTCAGACCTATATAAACATTTTATACAATCCAAAAATGTTAAGCGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAGTTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGACGGGAGGGCATGGAGCGTGGGTTGAGCTATCTGGGAAAATGCATGTCTTAGCAAGATTGCTTGCTCATTTACGTCAGAGAACAAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCACTTGAGGCTTGACGGCTCTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATCCATCCAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTCGATCCTGACTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGGCAGAAAAAAAGAGTTTATATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGCCTTGTGGCACAGGGTAACTTGCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGAGAACATCAAGTCAGAGATTCATGAAAAGATGCAATGTAGTCGGTGTCAAACATTTGATGGCCCTCAAAGCACTGACGCCCAATCAACAATAACAGATAGTGAATCTGATGAAGAAACCTCTGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAGGATTTAGGAAGTTGGGGCCATCATTTTTTCCCAACTTCTGTACCAGATGCTATCCTTCAGGCTTCAGCCGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTAACGGACGACTGGTACCCATTGAGTCCATCACGAGTCCCAAGCTACAGCAAAAGGAACCAAATAAGGAATTACTCAAGTCAAGACAGAACGGTAAACAAAAGCCCACTCCTTTATCTTTACATAACATACTACCACTGCAGTCTGCTTCTGGTGTTGCTAGTATGTCATCATCTACTCCCATTGCTTGGACGAAGGAAACAGTAAATTCTGTCGGGATTACTACAAACATCTCCATGAATGTAGCATTTAAGACCGAGTACTCTCTTGTAAGTAAAGTATTGCCACAGAAAAGATCATGTCCTGCTAATATCAATGATGATAATTTTGAGTAA 2205 0.4154 MFDCVSGLSTSPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGNPMVRKAIIVTPTSLVSNWEAEIKKWVGERVCLVALCESTREDVISGIDNFTSPQSNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEEKKLGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNLLSTEDLRDLFTFHENIKSEIHEKMQCSRCQTFDGPQSTDAQSTITDSESDEETSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFFPTSVPDAILQASAGDEVTFVFTNQVNGRLVPIESITSPKLQQKEPNKELLKSRQNGKQKPTPLSLHNILPLQSASGVASMSSSTPIAWTKETVNSVGITTNISMNVAFKTEYSLVSKVLPQKRSCPANINDDNFE 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02633 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 509 IPR001650 -
Pumo8g02633 734 Pfam Helicase conserved C-terminal domain 350 458 IPR001650 -
Pumo8g02633 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 231 IPR027417 -
Pumo8g02633 734 FunFam DNA repair and recombination protein RAD54-like 336 506 - -
Pumo8g02633 734 MobiDBLite consensus disorder prediction 635 663 - -
Pumo8g02633 734 SMART ultradead3 6 189 IPR014001 -
Pumo8g02633 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 8 181 IPR014001 -
Pumo8g02633 734 FunFam Predicted protein 253 327 - -
Pumo8g02633 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 620 IPR027417 -
Pumo8g02633 734 MobiDBLite consensus disorder prediction 538 561 - -
Pumo8g02633 734 Pfam SNF2-related domain 12 299 IPR000330 GO:0005524|GO:0140658
Pumo8g02633 734 SMART helicmild6 375 459 IPR001650 -
Pumo8g02633 734 Gene3D - 231 538 IPR027417 -
Pumo8g02633 734 CDD DEXHc_RAD54 1 231 - -
Pumo8g02633 734 FunFam DNA repair and recombination protein RAD54 1 230 - -
Pumo8g02633 734 Gene3D - 253 522 - -
Pumo8g02633 734 CDD SF2_C_SNF 342 470 - -
Pumo8g02633 734 PANTHER SNF2/RAD54 FAMILY MEMBER 1 631 - -
Pumo8g02633 734 Gene3D - 1 230 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02633 Pumo-Chr8 63475206 63483315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02633 339 517 RAD5 or RAD16-like Gene Family AT5G43530 36.111 8.25e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo8g02633 SNF2_N 4.4e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02633 K10875 - gmx:100781631 1363.21