Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02573 ATGGCTATCCAAGAATCTCTGTTAGACAGGCCTAGAAAATCTGTTTCCAAAACTATCTGTTTAATCTTTTCTATAGCTGCTGTCATAAGCTCATCAGCCTTGATTGGTTCTTATCTCATCAAATCCACCTCCTTCTTCAACCAATCCTCTCCTCAACATCTCTGTGATCATGCACTTGATAGGGCAACATGCTTAGCACATGTCTCGGAAGTGGTACAAGGTCCCATCTTGACCACCACAAAAGACCACAAATTCAATTTGCTACTATCGTTCCTAATGAAATACACCTCACACATTAAGAGTGCTATGAACACAGCCAGTTCTATCAAACTTAGGATCAACAGTCCCAAAGAGGAAGCAGCTTTGCACGATTGTGTGGAGCTGATGGACTTGTCCATGAGCAGAGTTTGGGACTCAATGGTGACTCTAACAAAACAAACCATTGAGTCTCAACAAGATGCACACACGTGGCTAAGTAGCGTGCTCACTAACCATGCAACTTGCTTGGATGGGTTAGAGGGGCCAGCTCGTGCCCTTATGAAGGCTGAACTTGAGGACTTGATATCCAGATCAAGAACCTCTCTGGCCATGTTTGTTGCTGTTTTGCCTCCAAAGGTTGAACAAATCATTGATGAACCACTACATGGGGAGTTTCCCTCGTGGGTGAACAGCAAGGACCGGAGGCTTTTGGAATCTAGGGTTAGGGACATCAAGGCTAATGTTGTGGTGGCTAAGGATGGAAGTGGCAAGTTTAAGACTGTGGCCGAGGCTGTGGCATCTGCACCTGACAACGGTAAGACAAGGTATGTTATTTATGTGAAAAAGGGAACATATAAAGAAAATGTTGAAATTGGTAAGAAGAAGACCAACGTGATGCTCGTCGGAGATGGTATGGATGCAACTGTAATCACCGGCAGCTTGAATTTCGTCGATGGAACAACCACATTTAAGACTGCCACTGTTGCCGCTGTGGGTGATGGATTTATAGCTCAAGACATATGGTTCCAAAACACAGCAGGCCCACAGAAGCACCAAGCAGTGGCTCTTCGCGTGGGTGCCGATCAATCCGTCATAAACCGCTGCCGCATTGATGCCTTCCAAGACACTCTCTATGCCCACTCCAACAGGCAGTTCTACCGAGACTCCTTTATCACTGGCACCGTTGACTTCATATTTGGAAATGCAGCTGTTGTGTTCCAAAAGTGCAACTTGGTAGCCCGAAAGCCCATGAGTAAACAGAACAACATGGTCACGGCCCAAGGACGAGAAGATCCAAACCAGAACACAGGAACTTCAATTCAACAATGTAACCTAACACCAAGCTCGGATCTTAAGCCTGTGGTGGGCTCCTTCAAAACTTTTCTAGGCCGCCCATGGAAGAAGTACTCGAGAACTGTTGTGATGCAGTCGACATTGGACAGCCACATTGACCCAGCAGGATGGGCAGAATGGGATGCCCAGAGTAAAGACTTTTTGCAAACATTGTATTATGGAGAGTACATGAATAACGGGCCAGGTGCTGGTACCAGCAAGAGAGTGAAATGGCCTGGTTATCATATCATTAAAACTGCAGCAGAGGCCAGCAAGTTCACAGTAGCACAGCTCATCCAAGGCAATGTTTGGTTGAAGAACACTGGGGTCAACTTTATTGAAGGCCTCTAA 1662 0.4609 MAIQESLLDRPRKSVSKTICLIFSIAAVISSSALIGSYLIKSTSFFNQSSPQHLCDHALDRATCLAHVSEVVQGPILTTTKDHKFNLLLSFLMKYTSHIKSAMNTASSIKLRINSPKEEAALHDCVELMDLSMSRVWDSMVTLTKQTIESQQDAHTWLSSVLTNHATCLDGLEGPARALMKAELEDLISRSRTSLAMFVAVLPPKVEQIIDEPLHGEFPSWVNSKDRRLLESRVRDIKANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGMDATVITGSLNFVDGTTTFKTATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAAVVFQKCNLVARKPMSKQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSFKTFLGRPWKKYSRTVVMQSTLDSHIDPAGWAEWDAQSKDFLQTLYYGEYMNNGPGAGTSKRVKWPGYHIIKTAAEASKFTVAQLIQGNVWLKNTGVNFIEGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02573 553 NCBIfam pectinesterase inhibitor domain 48 177 IPR006501 GO:0004857
Pumo8g02573 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Pumo8g02573 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Pumo8g02573 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 198 IPR035513 -
Pumo8g02573 553 PANTHER PECTINESTERASE 28 543 - -
Pumo8g02573 553 CDD PMEI-like_4 64 201 - -
Pumo8g02573 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Pumo8g02573 553 FunFam Pectinesterase 3 52 201 - -
Pumo8g02573 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Pumo8g02573 553 SUPERFAMILY Pectin lyase-like 238 552 IPR011050 -
Pumo8g02573 553 Gene3D - 234 553 IPR012334 -
Pumo8g02573 553 Pfam Plant invertase/pectin methylesterase inhibitor 52 191 IPR006501 GO:0004857
Pumo8g02573 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Pumo8g02573 553 FunFam Pectinesterase 234 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02573 Pumo-Chr8 62931064 62933549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02573 5 553 Carbohydrate Esterase AT1G11580 56.530 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02573 K01051 - gmx:100815836 1033.09