Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02572 ATGGCTATCCAACAATCCCTGCTAGACAAGCCTAGAAAATCCATTTCCAAAACTATCTGGTTAATTCTCTCTGTAGCTCTTGTGTTAAGCTCATCGGCTCTTATTGCTTCTTATCTCATCAAACCCACCTTGTTCTTCAACCACTCCTCCCCTCACCATATTTGTGATTATGCACTGGATACTACATCCTGCTTAGCACATGTCTCAGAAGTAGCTCAAGATCTGATCTTGACCACTACAAAAGACCACAAATTTAATATGCTGCACTCTTTCCTAATGAAATCCACTTCACACATTCAGAGAGCTATCAACACAACCAATGCCATTAGACTTAAGATTAACAATCCTAAGGAGAAAGCAGCTTTACATGACTGTGTGGAGCTAATGGACTTGTCTATGGATAGAATTTGGGACTCAATGGTGGCTTTAACAAAAGAGACCACTGAGTCATTGCAAGATGCACACACATGGCTAAGTAGCGTGCTCACTAACCATGAAACTTGCTTGGATGGATTGGAGGGGTCTCCTCGAAAACTTATAGTAGAGGTTGAGCTTCAGAACTTAATTTCTAGAGCAAGAACCTCTTTAGCCATGCTTGTTGCTGTTATACCTCCAAAGGTTGAAAAAATAATTGATGAGGAACTAAATGGGAACTTTCCCTCGTGGGTAACAAACAAGGACCGGAGGCTTTTGGAGTCTACGGCTAAGGACATCAAGGCCAATGTTGTGGTGGCTCCGGATGGGAGTGGCAACTTCAAGACTGTGGCTGAGGCTGTGGCATCTGTACCTGACAAAAGCAAGACAAGGTATGTTATCCATGTGAAAAAGGGAACATACAAAGAGAATGTTGAGATTAATAGTAGGAAGAAGAATGTGATGCTCGTGGGTGATGGTATGGATGCAACTATAATCACGGGCAGCTTGAATTACATTGACGGAACAGGCACCTTTAGGAGTGCCACTGTTGCCGCGGTTGGAGATGGGTTTATAGCCCAAGACATTCGGTTCCAAAACACAGCAGGCGCAAAGAAGCACCAAGCAGTGGCTCTTCGCGTTGGTGCTGACAAGTCTGTCATAAACCGCTGTAAAATCGATGCATTCCAAGACACTCTTTATGCTCACTCCAACAGGCAATTCTACCGTGACTCCTTCATCACTGGCACCATTGACTTCATCTTCGGAAATGCAGCTGTTGTATTCCAAAAATGCAAGTTGGTGGCTCGAAGGCCCTTGAGTAACCAACAAAACATGGTCACGGCTCAAGGACGAACAGATCCAAACCAAAACACAGGAACTTCGATTCAACAATGTTATATAATACCAAGCACGGATCTCAAGCCTGTCATGAACTCCATTAAAACTTTTCTAGGCCGCCCATGGAAGAATTTCTCCAGAACCGTTGTGATGCAATCCTCGATAAGCAACCATATTGACCCAACAGGATGGGCAGAGTGGGATGCCCAGAGTAAGGACTTTTTGCGAACGTTGTATTATGGTGAATACATGAATAATGGACCAGGTGCTGGTACCAACAAGAGAGTGAATTGGACTGGTTATCATATCATCAAAACTGCAGCAGAGGCCAGCAAGTTCACGGTAAAAGAACTTATCCAAGGTAATGAATGGTTGAGAAACACTGGGGTGAACTACATTGAGGGCCTCTAG 1665 0.4396 MAIQQSLLDKPRKSISKTIWLILSVALVLSSSALIASYLIKPTLFFNHSSPHHICDYALDTTSCLAHVSEVAQDLILTTTKDHKFNMLHSFLMKSTSHIQRAINTTNAIRLKINNPKEKAALHDCVELMDLSMDRIWDSMVALTKETTESLQDAHTWLSSVLTNHETCLDGLEGSPRKLIVEVELQNLISRARTSLAMLVAVIPPKVEKIIDEELNGNFPSWVTNKDRRLLESTAKDIKANVVVAPDGSGNFKTVAEAVASVPDKSKTRYVIHVKKGTYKENVEINSRKKNVMLVGDGMDATIITGSLNYIDGTGTFRSATVAAVGDGFIAQDIRFQNTAGAKKHQAVALRVGADKSVINRCKIDAFQDTLYAHSNRQFYRDSFITGTIDFIFGNAAVVFQKCKLVARRPLSNQQNMVTAQGRTDPNQNTGTSIQQCYIIPSTDLKPVMNSIKTFLGRPWKNFSRTVVMQSSISNHIDPTGWAEWDAQSKDFLRTLYYGEYMNNGPGAGTNKRVNWTGYHIIKTAAEASKFTVKELIQGNEWLRNTGVNYIEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02572 554 NCBIfam pectinesterase inhibitor domain 95 177 IPR006501 GO:0004857
Pumo8g02572 554 CDD PMEI-like_4 59 202 - -
Pumo8g02572 554 PANTHER PECTINESTERASE 27 544 - -
Pumo8g02572 554 FunFam Pectinesterase 235 554 - -
Pumo8g02572 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 198 IPR035513 -
Pumo8g02572 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Pumo8g02572 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Pumo8g02572 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 203 IPR035513 -
Pumo8g02572 554 Pfam Plant invertase/pectin methylesterase inhibitor 52 189 IPR006501 GO:0004857
Pumo8g02572 554 SMART PMEI_2 46 198 IPR006501 GO:0004857
Pumo8g02572 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Pumo8g02572 554 FunFam Pectinesterase 3 52 202 - -
Pumo8g02572 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Pumo8g02572 554 Gene3D - 235 554 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02572 Pumo-Chr8 62919602 62921611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02572 5 554 Carbohydrate Esterase AT1G11580 55.000 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02572 K01051 - gmx:100815836 875.544