Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02570 ATGTTTCACACAAACATGTTTGATTCTCACCCTCACACTCACATGCTTGATATGTCATCCCACAAGAGTGAGAGTGATCTGGGAAAGGCCAGAGATGATGAGTACGAGACTAAATCTGTCACTGACACCGACACCATGGACGGCGACGACCAAGATCCCAACCCCCGACCCAAAAAGAAGGGATACCGCCGCCACACACAGCGCCAAATAGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGTTGAGTCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACACAACATGAACGACATGAGAATGCTATTTTGAAGGCCGAGAATGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTTCATGCCCTAACTGTGGAGGCCCAGCTGCTCTTGGTGAAATGTCCTTTGATGAGCAGCACTTGAGGATTGAGAATGCTCGGTTAAGAGAAGAGATTGATAGGATTTCAGGAATTGCAGCCAAATATGTTGGAAAGCCAGTGACTTCTTCGTACTCCAACCTTTCATCACTGAATAACAACCACATGCCTGTTGGTAACTATGGATCACAGTCAGGCTCGGTAGGAGAAATGTATGGCGGCAGTGACCTTTTTAGGTCACTCCCAGCTCCTGCTGATGCTGACAAACCCATGATTGTGGAGCTTGCTGTTGCAGCAATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGACCCTTTATGGGTCCCCAGCAATCACCATTCTGATATTCTAAATGAAGATGAATACTTGAGGGCTTTCCCTACTAGAGGTTTAGGCCCCAAACCCTTGGGCTTGAGATCTGAAGCTTCAAGGGAATCCGTGGTGGTTATCATGAATCACATTAACCTTATTGATATCCTTATGGATGTGAACCAATGGTCAACAGTGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCACTTGTTCCAACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCGGTGGTCGATGTTTCCTTGGATAATCTGCGACCCAGTACAATCTCAAGAAGCCGAAGAAGGCCCTCTGGCTGTTTAATTCAAGAATTGCCAAATGGTTACACCAAGGTTACATGGATTGAACATGTAGAAGTGGATGATAGAGCGGTGCATAGCATATATAGACCTCTGGTTAATTCGGGCCTCGCCTTTGGAGCCAAACGCTGGGTGGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGGACCTCTGTGTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATCAGCTATTGCACTGGTGTTGGTGCTTCTACTGCACATGCTTGGACAACGCTATCCGCAACTGGATGTGATGATGTAAGGGTCATGACAAGAAAGAGCACCGACGAACCTGGCAGACCCCCCGGTATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTTCCAGTTCCTCCAAAGAGGGTTTTTGATTTCCTACGTGATGAAAACTCAAGAAATGAGTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTAGCACACATAGCAAATGGTCGTGATCCCGGCAATTGTGTCTCTTTACTCCGAGTCAATAGTGCAAATTCAAGCCAAAGTAATATGCTGATACTTCAAGATAGTTGCACTGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTATGAATGTAGTCTTGAGTGGAGGGGACCCAGATTATGTTGCCCTGTTGCCCTCTGGCTTTGCTATTCTTCCTGATGGGCCTGCACCAAACGGGGGGCCCATAATTGATGTTGGATCTGGTGGTTCTCTACTCACAGTGGCATTCCAGATCTTAGTTGATTCAGCCCCAACAGCAAAGCTATCTCTGGGTTCAGTGGCCACTGTTAACAGTCTAATTAAGTGCACAGTTGAAAGGATCAAAGTTGCAGTGGTACGTGACAACACTTGA 2178 0.4702 MFHTNMFDSHPHTHMLDMSSHKSESDLGKARDDEYETKSVTDTDTMDGDDQDPNPRPKKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENAILKAENEKLRAENNRYKEALTNASCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNHMPVGNYGSQSGSVGEMYGGSDLFRSLPAPADADKPMIVELAVAAMEELTRLAQAGDPLWVPSNHHSDILNEDEYLRAFPTRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTVFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYTKVTWIEHVEVDDRAVHSIYRPLVNSGLAFGAKRWVATLDRQCERLASSMANNIPAGDLCVITSAEGRKSMMKLAERMVISYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQDSCTDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPAPNGGPIIDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVVRDNT 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02570 725 ProSiteProfiles START domain profile. 237 469 IPR002913 GO:0008289
Pumo8g02570 725 SUPERFAMILY Bet v1-like 487 716 - -
Pumo8g02570 725 SMART HOX_1 58 120 IPR001356 GO:0003677
Pumo8g02570 725 Gene3D - 314 468 IPR023393 -
Pumo8g02570 725 MobiDBLite consensus disorder prediction 1 66 - -
Pumo8g02570 725 SUPERFAMILY Homeodomain-like 44 116 IPR009057 -
Pumo8g02570 725 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Pumo8g02570 725 FunFam Homeobox-leucine zipper protein GLABRA 2 246 465 - -
Pumo8g02570 725 CDD homeodomain 59 117 IPR001356 GO:0003677
Pumo8g02570 725 FunFam Homeobox-leucine zipper protein HDG1 45 132 - -
Pumo8g02570 725 Pfam Homeodomain 59 114 IPR001356 GO:0003677
Pumo8g02570 725 SUPERFAMILY Bet v1-like 238 468 - -
Pumo8g02570 725 Gene3D - 43 132 - -
Pumo8g02570 725 SMART START_1 246 466 IPR002913 GO:0008289
Pumo8g02570 725 MobiDBLite consensus disorder prediction 14 57 - -
Pumo8g02570 725 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 720 IPR042160 -
Pumo8g02570 725 CDD START_ArGLABRA2_like 241 465 - -
Pumo8g02570 725 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Pumo8g02570 725 Pfam START domain 247 466 IPR002913 GO:0008289
Pumo8g02570 725 Coils Coil 110 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02570 Pumo-Chr8 62896370 62899916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02570 1 723 Homeobox Transcription Factor Family AT4G21750 76.147 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo8g02570 START 1.4e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02570 K09338 - gmx:100782240 1348.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02570 8 62896370 62899916 Pumo8g02570 8 62896370 62899916 ECH
Pumo3g00742 3 11817498 11823168 Pumo8g02570 8 62896370 62899916 ECH
Pumo8g02570 8 62896370 62899916 Pumo3g00742 3 11817498 11823168 PCT