Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02564 ATGGAGCAAGCGGTGTCACTGATTGGTGCCCTCAACCTCGTTTCCCGCAACCTCCCTCTTCCCCCCGACCTCTTTCACACCGTTTCTTCCATCTATCACCGATCTCTCAATTCCTCTTCCTCTTCCTCTTCCGAGGCCGATGATGCACCGGAACAAGATTTGTTGGCCGACCTTCAAGATGCGCTGTTGGAGCAACTTCCTAACTGCGCCTCCGCTTCCAAATTGAACAAAACAAGGGAAAGCCGTTATCAGACTCAGATTCACTGCCGCTTAACCCAACTCCAAGGATTGCCTTCAAGCAGGGGAGAGGACCTACAGACTAGGTGCTTGCTCGAGCTTTATGGACTAAAGCTAGCTGAGTTGCAGAGGAAGGTGCGGACTGACGTGAGTTCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGATAGGCAATTGTTTGATTGGAGCATGATGCGGTTGCGTCGTCCGCTGTATGGTGTAGGAGATCCATTTGCCATGGATGCCGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTGGAAGAGCAGGCAAAAAATCATATGGAGACCAGAAAAAGAAGATTTTTTGCAGAAATACTGAATGCGGTTCGTGAGTTCCAATTACAAATTCAAGCTACTTTGAAGCGGAGAAAACAGAGAAATGATGGTGTACAGGCATGGCATGGAAGGCAAAGGCAACGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTAAAAGAGAGTAAGAATGAAAGATTGACTATGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCCGTTCAACGTCAAAAGGACTCAAAACAATTAGATGGTATTGAACCCTTGGAAGATTCAGAAACTGATTTACCTGAGTCAGAGTCAGATAAATTGAAGAATGGAATTTCTAAGGAATCACCTCTTGAGGAAGATGTGGATTTGATAGATTCTGATCATAATGGTGATACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATACCAGCTAGAAGGCCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATATTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACCATCTCATTGATAGCATATCTTATGGAACACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCAACATGGGTTCCTAGCATCACAACCATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATCCATTGGCGCTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTATGGTCCCTGCTCAATTTTCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTGGATGTCTCTCTAACCGATGAAGAACAACTATTGATCATTCGGCGTCTGCATCAAGTGATAAGGCCCTTCATATTGAGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTAGCAAATCTCAGGTCATTCTCAAATGTGACTTGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGATGTTGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAATGTTGTAACCATCCCTACCTCTTTGTGGGTGACTATGATATCTATAAACACAAGGAGGAGATTGTCAGAGCATCAGGAAAGTTTGAACTCCTTGATCGTTTGCTTCCAAAACTTCGTAGAGCTGGTCACAGAATCCTCCTTTTTTCTCAGATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTTAATGATTTTAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCACCTGATTCTCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAATCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTTTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAAGCAGGGCTTTTTAACACAACTTCTACAGCACAAGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGTACGGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCGGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGCGAAGGCAAAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAACTGCCAGATTGGGTATACTCTCCACTAAATAAGGACGATAAGGTCAAATATTTTGACAGTGGTAGTGTTACCGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACGTTAAGTGACCTACAATGGATGAAGGCTGTGGAGAACGGACAGGACATATCTAAGCTTTCAGTCAAAGGGAAAAGAAGAGACCACCTCCCTGTTGACAACCATGCACAAGCTAGTGATGACATGGGGACAGAAGAACGGTTATTAGAGTTAAGGAATGAGAGATCAAGTGAAGACACTTTCGACATGACTCCTGCCTCTAAGAGACTCAAACCTGAAGAAATAAATTCCCAGAAACATGAAAACGAGGATGTCGGAGTTGGTGGTTTGAACGAGCATATATTTTCCTGGAATACTCACAGAAAGAAGAGATCAAGCTATCTTGGTCAGGGTTCATTCTCTGATAGTAGAGGGCAGAATTCAAATGGAAGATCAAACTGA 3222 0.4227 MEQAVSLIGALNLVSRNLPLPPDLFHTVSSIYHRSLNSSSSSSSEADDAPEQDLLADLQDALLEQLPNCASASKLNKTRESRYQTQIHCRLTQLQGLPSSRGEDLQTRCLLELYGLKLAELQRKVRTDVSSEYWLNVKCAYPDRQLFDWSMMRLRRPLYGVGDPFAMDADDQIRKKRDAERLSRLEEQAKNHMETRKRRFFAEILNAVREFQLQIQATLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTMLLEETNKLLVNLGAAVQRQKDSKQLDGIEPLEDSETDLPESESDKLKNGISKESPLEEDVDLIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEHKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYKHKEEIVRASGKFELLDRLLPKLRRAGHRILLFSQMTRLMDILEIYLRLNDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLNKDDKVKYFDSGSVTGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSVKGKRRDHLPVDNHAQASDDMGTEERLLELRNERSSEDTFDMTPASKRLKPEEINSQKHENEDVGVGGLNEHIFSWNTHRKKRSSYLGQGSFSDSRGQNSNGRSN 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02564 1073 Pfam Helicase conserved C-terminal domain 688 801 IPR001650 -
Pumo8g02564 1073 Pfam Snf2-ATP coupling, chromatin remodelling complex 895 955 IPR029295 GO:0042393
Pumo8g02564 1073 MobiDBLite consensus disorder prediction 969 1034 - -
Pumo8g02564 1073 MobiDBLite consensus disorder prediction 313 345 - -
Pumo8g02564 1073 Pfam SNF2-related domain 380 668 IPR000330 GO:0005524|GO:0140658
Pumo8g02564 1073 PANTHER SNF2/RAD54 HELICASE FAMILY 166 992 - -
Pumo8g02564 1073 Gene3D - 608 908 IPR027417 -
Pumo8g02564 1073 Coils Coil 175 195 - -
Pumo8g02564 1073 MobiDBLite consensus disorder prediction 1052 1073 - -
Pumo8g02564 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 602 IPR027417 -
Pumo8g02564 1073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 555 IPR014001 -
Pumo8g02564 1073 SMART ultradead3 373 566 IPR014001 -
Pumo8g02564 1073 MobiDBLite consensus disorder prediction 292 345 - -
Pumo8g02564 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 855 IPR027417 -
Pumo8g02564 1073 FunFam Chromatin structure-remodeling complex protein SYD 368 611 - -
Pumo8g02564 1073 Coils Coil 892 912 - -
Pumo8g02564 1073 CDD SF2_C_SNF 679 812 - -
Pumo8g02564 1073 FunFam Probable ATP-dependent DNA helicase CHR12 608 907 - -
Pumo8g02564 1073 Gene3D - 345 601 IPR038718 -
Pumo8g02564 1073 SMART helicmild6 717 801 IPR001650 -
Pumo8g02564 1073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 858 IPR001650 -
Pumo8g02564 1073 SMART SnAC_2 894 955 IPR029295 GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02564 Pumo-Chr8 62795602 62802899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02564 674 829 RAD5 or RAD16-like Gene Family AT5G43530 36.709 1.51e-21 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo8g02564 SNF2_N 4.5e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02564 - - gmx:100775993 1959.88