Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02553 ATGCTGGCGAATCATTTCCAAAACGGCATCGAAACGGCGAGGCTCGTTTGGTCGCGGATTCCTAATTCGGAAGAATCGCAGCTCCTCGACGACGCCGTTGGCATCCTTAAGAAGAACGATGGAGGCGGTGTTGAGAGCCTTGACTATGAAGTCATTGAGAATTTTGCTTATCGTGAGGAACAGGCGCAGAGAGGGAAGCTGTATGTGAGCTATTTGCTGGTGGTGAAATGGTTCTTTGCCTTGCTCATTGGCATTTGTACAGGACTTGCTGCTGTTTTCATCAATATTGCTGTTGAAAATTTTGCTGGCTGGAAGTTCTCAGTGACATTTGATATAATTCAGAAATCATATATTGCTGGATTTATCGTATATGTCCTGATCAACTTGGCTTTGGTGTTTTCCTCTGTATATATTATCACACAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGAGTTGATATTCATGGCATCCTTCTTTTCAGAACTTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGTGGAGGCCTTGCTCTGGGTAAAGAAGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCTACTAAGTATCATCTAAATTCAAGGTGGTTTCAAGTATTTAAAAGCGACCGGGATCGCCGTGATCTTGTAACCTGTGGATGTGCAGCTGGAGTTGCTGCAGCATTTAGAGCTCCAGTTGGTGGTGTATTGTTTGCTTTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTCATGTGGCGTGTCTTCTTCACTTCTGCTGTTGTGGCTGTTGTGGTCCGAGCTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACACTTTGGGTCCGGTGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCCTTTGCAGAGTTATTTCCAATGGCTATTATTGGGGTTACTGGAGGCCTACTAGGAGCTTTATTCAACCAGCTTACACTTTATATTACCACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACAGGGTCAAGATTATTGAAGCATGCCTTGTATCCATTTTAACATCAGCCATTTCATTTGGCTTGCCACTTCTAAGAAAATGTAGTCCTTGTCCTGATTCTGATCCTGCATCCGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTAAATTTTTTTTGTAGCAAAGACAAAGAATACAATGATCTTGCAACTATTTTCTTCAACACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATAAATGAGTACAGTTCCCAAAGTTTATTAACCTTTCTGGTATTGCTTTCTTGCTTACTGATTTGGATTTGGCATACATCAGACTTTAGTTCTGTGATATTTTCTGTTATAATTATGGCAAACTTTGGACTTTGGTATATGCTAGTATCTGTACGGTAG 1485 0.4168 MLANHFQNGIETARLVWSRIPNSEESQLLDDAVGILKKNDGGGVESLDYEVIENFAYREEQAQRGKLYVSYLLVVKWFFALLIGICTGLAAVFINIAVENFAGWKFSVTFDIIQKSYIAGFIVYVLINLALVFSSVYIITQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELFPMAIIGVTGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSILTSAISFGLPLLRKCSPCPDSDPASGIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVLLSCLLIWIWHTSDFSSVIFSVIIMANFGLWYMLVSVR 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02553 494 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02553 494 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02553 494 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02553 494 Pfam Voltage gated chloride channel 132 467 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02553 494 Gene3D Clc chloride channel 69 488 - -
Pumo8g02553 494 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo8g02553 494 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo8g02553 494 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo8g02553 494 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo8g02553 494 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo8g02553 494 SUPERFAMILY Clc chloride channel 54 472 IPR014743 -
Pumo8g02553 494 FunFam Chloride channel ClC3 68 385 - -
Pumo8g02553 494 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02553 Pumo-Chr8 62696371 62700791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02553 1 469 Ion Channels AT5G26240 81.702 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02553 K05016 - gmx:100811908 879.011