Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02552 ATGTTCCCATACTGGAGAGAGTTGACACTTGGCACTTTTGATGCTTTACATGTTTATATTGTGATTATTTTCTCTATTATCTTGCAGGTTATGTTTTATGCTTTAGCAGTGGTCACGTTTGGTACTGCTGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGGCGTCTTGTTGGCATGTTTGTCGTAAAATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGAGGCTCAATGCGGATGACAGTATCTCTATGTGTCATTATGGTTGAAATCTCAAATAACTTAAAATTTTTACCTCTTATTATGCTTGTTCTTCTTATATCGAAGGCTGTTGGTGATGCTTTTAACGAAGGTATCTATGAAGAGCAGGCTCAATTGAGGGGCATTCCATTACTGGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAAGCCTGTGGGAGTGGAAGGGTGGTCTCTTTCCCTCGCGTTGTTAAGGTTTCAGACGTAGTTTCCATTCTGCGGAGCAACAAACACAATGGTTTTCCAGTGATAGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTGCTTCGTAGTCATTTATTGGTAATTCTGCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGATCCTAGAGGTGGGGGCAGATCAATTAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTATTGATGATATACATCTAAGTTCAGATGACTTAGAAATGTACATCGATCTTGCTCCATTTTTGAATCCCTCACCATATATTGTACCAGAAGATATGTCTTTGACAAAGGTATACAATCTTTTCCGTCAACTTGGTCTAAGGCATTTATTTGTTGTTCCTCGTCCATCACGTGTGCTTGGTTTGATAACAAGAAAAGATTTGTTGATTGAGGACAAAGAAAATGTGAATACGTTAGAGCTTCAGTCAACGAGTGTAAGAATTCCGCATCAGAATAAAAGATTGACGACAAGAAATATAGATGTGGAGCGCCCTTTACTAAACGGACTGCTTCAGAATCAGATACCTGACTGA 1128 0.3963 MFPYWRELTLGTFDALHVYIVIIFSIILQVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVVKVSDVVSILRSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGRSIRHDSGEFAKPVSSKGICIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDKENVNTLELQSTSVRIPHQNKRLTTRNIDVERPLLNGLLQNQIPD 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02552 375 Pfam CBS domain 281 328 IPR000644 -
Pumo8g02552 375 Pfam CBS domain 177 220 IPR000644 -
Pumo8g02552 375 PRINTS Chloride channel signature 135 149 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02552 375 PRINTS Chloride channel signature 79 95 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02552 375 PRINTS Chloride channel signature 97 116 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02552 375 PRINTS Chloride channel signature 44 64 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02552 375 Gene3D - 169 333 IPR046342 -
Pumo8g02552 375 Pfam Voltage gated chloride channel 22 128 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo8g02552 375 Gene3D Clc chloride channel 4 149 - -
Pumo8g02552 375 ProSiteProfiles CBS domain profile. 280 337 IPR000644 -
Pumo8g02552 375 FunFam Chloride channel protein 272 363 - -
Pumo8g02552 375 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 332 - -
Pumo8g02552 375 SUPERFAMILY CBS-domain pair 153 327 IPR046342 -
Pumo8g02552 375 SUPERFAMILY Clc chloride channel 20 150 IPR014743 -
Pumo8g02552 375 CDD CBS_pair_voltage-gated_CLC_euk_bac 170 327 - -
Pumo8g02552 375 SMART cbs_1 169 221 IPR000644 -
Pumo8g02552 375 SMART cbs_1 283 331 IPR000644 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02552 30 345 Ion Channels AT5G26240 83.544 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02552 K05016 - gmx:100811908 674.47