Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02548 ATGACGTTCATTCAGCATATGCAGCTATATTATAAGAATACAACTTCAGTTTTGACTGCATCAATCTTTTCTTCCTATCAAAAATTCCATGTTCTCTTTGTTGCCTTCCTTCTATGTTCCAATGTTCCAGGGAATGCTAACTCGATTGAACTGGGATCCAGCATTGTGGCTGGCACCAATTCATCTTGGCGATCGTCCTCTGGTGATTATACCTTTGGCTTCTACCGCCTTGTTAATGGCCACTATCTTGTTGGAATTTGGTTTGACAAGGTTCCACACAAAACACTTGTTTGGTCTGCAAACCGCGACAATCCAGTTGAAATTGGATCATTCATCGATCTCACACCAAGTGGCCAATTTGTGCTACAACCTGTAAATGGGGCTTCATTTCCAATCTACAATGGAACAAACACAGCCTCTGCGGTGATGCAGGATGATGGGAATTTCGTCTTGAGGAATTCACTTTCCAATGTTATATGGCAGAGCTTTGATTCACCCACGGATACTCTTCTATTAGGCCAAACTTTGAATATGAGTCAGAAGCTCTACTCCAATGCCAATGGATCAGTAGACTACTCAACAGGGCAATACAGTTTGGAGATCCAACAATCTGATGGCAACATTCTCCTCAAAGCTTTCCGGTTCACAGATTCTGCCTATTGGTGGAGTGGAACTGTCCAAAATACAGGTGTAAGAATTATTTTTGACAACACAACAGCTTTTCTTTATGCGGTCAATGTCACACACCAAGTTATTTTTAACATGACAACTCAAGAAATAGGTGCAATCGAAGATTACTATCATCGCGTGGTGGTTGATGACAAGGGAAACTTTCAGAAGTGGATTTACCATAAAGAAAATGGAAGTGAGTGGAGACCTGTATGGAAGGCTATAAAAAGGCCTTGCATTGTGACTGCCCTTTGTGGGGTGTATGGCTTTTGCAATACATCTGATTCTGACAACCAAAGATACAGTTGTGAATGCTTGCCTGGCTTTACTCTTTTAGATCCAAGTGTACCCTCCAAAGGGTGCTATCTCAGTGAGGTCAAGGACCTGTGTGCTGCAAATTCCTCTGCCCCAAACTTTAAGGTGGAAGTGAAAGCAATGCAAGATACTCAGATACCAAACGATGGTTATTTTTTTCTTGATCTACAAGTCATAGATGACATGGATTTGGAAAGCTGCAAGAGGGAACTGATGAATGACTGTCTCTGCATGGCTGCTGTTTTAGATGGCACTGCTTGCCACAAGAAAAAATGGCCAATTATAAATGCCATGAGAATCATTCCTGACACTAGTGATCGTGTGACGCTAATTAAAGTTCCTGTGGCTGACAATAACATGGACAATAAAAAGGATTCACCGCCTTTGGTTGTTTTGATGGTGGCTCTCATCTCTTGCTCCTTACTTGCTGCATTGTTTGCAGCTATTGCCATTTATCATCAACCTGGTTGTCTGTATCTCATGCACAAAGGGTCACCACCACCAAAGCCAAAGCCTATGGATATTAATCTAAAGACATTCTCATTCCAACAACTGAGAGAAGCAACAAATGGATTCAAGGACGAACTTGGTCGAGGTGCATATGGTACAGTGTATGATGGCATTTTAAACATGGAGGGTCAACAGGTCGAGGTTGCTGTCAAACAACTAGAACAAGTAGAAGATCAAGGTGAGAAAGAATTTGTTACAGAAGTTCAAGTTATTGCTCTCACTCATCATAAAAATCTTGTTGGGATATTGGGATACTGCAATGAGCGGAATCATAGGCTTTTGGTTTATGAGAAAATGGAAAATGGGACACTATCCAACTTCCTTTTTGGAGAAGGGGGTAAACCCAGCTGGGAGAGTAGAGTAAGAATTGTGCTTGAAGTTGCAAGAGGCTTATTATATCTGCATGAAGAGTGTGACCAACAAATCATCCATTGTGACATAAAGCCTCAAAATGTTCTTCTTGACTCTAGTTACACTGCAAAGATTTCAGATTTTGGGCTGGCAAAGATGCTAATGAAAGATAAAACTCGAACAAACACCAATGCTAGAGGGACAATGGGATATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTTGATATCTACAGCTTTGGAGTCATGTTGTTGGAAATCATATTTTGCAGAAGGCATATCGAGTTGCATCAAATTGAGGATGGAACAATGGGTGAAGACATGATACTCATAGATTGGGCCCTATATCTGGCAAAAGAAAACTATTTAAGAGCCGCAGTGATTCATGATCTTGAAGTTGAAAGTGATTTCAAATCGTTTGAAAGAATGGCAATGGTTAGATTATGGTGCGTAAATCCCAATCCAACTCTTCGACCATCAATGAAAATGGTGGTACAGATGTTGGAAGGAGATATAGAAGTGGGTGTTCCACCACTCAACTAA 2421 0.4093 MTFIQHMQLYYKNTTSVLTASIFSSYQKFHVLFVAFLLCSNVPGNANSIELGSSIVAGTNSSWRSSSGDYTFGFYRLVNGHYLVGIWFDKVPHKTLVWSANRDNPVEIGSFIDLTPSGQFVLQPVNGASFPIYNGTNTASAVMQDDGNFVLRNSLSNVIWQSFDSPTDTLLLGQTLNMSQKLYSNANGSVDYSTGQYSLEIQQSDGNILLKAFRFTDSAYWWSGTVQNTGVRIIFDNTTAFLYAVNVTHQVIFNMTTQEIGAIEDYYHRVVVDDKGNFQKWIYHKENGSEWRPVWKAIKRPCIVTALCGVYGFCNTSDSDNQRYSCECLPGFTLLDPSVPSKGCYLSEVKDLCAANSSAPNFKVEVKAMQDTQIPNDGYFFLDLQVIDDMDLESCKRELMNDCLCMAAVLDGTACHKKKWPIINAMRIIPDTSDRVTLIKVPVADNNMDNKKDSPPLVVLMVALISCSLLAALFAAIAIYHQPGCLYLMHKGSPPPKPKPMDINLKTFSFQQLREATNGFKDELGRGAYGTVYDGILNMEGQQVEVAVKQLEQVEDQGEKEFVTEVQVIALTHHKNLVGILGYCNERNHRLLVYEKMENGTLSNFLFGEGGKPSWESRVRIVLEVARGLLYLHEECDQQIIHCDIKPQNVLLDSSYTAKISDFGLAKMLMKDKTRTNTNARGTMGYMAPEWLKNAPVTTKVDIYSFGVMLLEIIFCRRHIELHQIEDGTMGEDMILIDWALYLAKENYLRAAVIHDLEVESDFKSFERMAMVRLWCVNPNPTLRPSMKMVVQMLEGDIEVGVPPLN 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02548 806 Gene3D Phosphorylase Kinase; domain 1 500 595 - -
Pumo8g02548 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Pumo8g02548 806 FunFam S-receptor-like serine/threonine-protein kinase 491 596 - -
Pumo8g02548 806 PIRSF SRK 19 806 IPR024171 GO:0004674
Pumo8g02548 806 Pfam Protein kinase domain 521 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02548 806 Pfam S-locus glycoprotein domain 263 333 IPR000858 GO:0048544
Pumo8g02548 806 SUPERFAMILY Protein kinase-like (PK-like) 496 795 IPR011009 -
Pumo8g02548 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 44 164 - -
Pumo8g02548 806 ProSitePatterns Protein kinases ATP-binding region signature. 524 549 IPR017441 GO:0005524
Pumo8g02548 806 CDD B_lectin 65 166 IPR001480 -
Pumo8g02548 806 SMART serkin_6 518 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02548 806 Gene3D Transferase(Phosphotransferase) domain 1 597 800 - -
Pumo8g02548 806 Gene3D - 43 164 IPR036426 -
Pumo8g02548 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 225 IPR036426 -
Pumo8g02548 806 ProSiteProfiles Bulb-type lectin domain profile. 40 164 IPR001480 -
Pumo8g02548 806 Coils Coil 537 557 - -
Pumo8g02548 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 801 - -
Pumo8g02548 806 SMART blect_4 54 166 IPR001480 -
Pumo8g02548 806 Pfam D-mannose binding lectin 95 181 IPR001480 -
Pumo8g02548 806 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 58 804 - -
Pumo8g02548 806 ProSiteProfiles Protein kinase domain profile. 518 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g02548 806 Gene3D - 167 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02548 Pumo-Chr8 62604833 62607253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02548 499 805 Receptor kinase-like Gene Family AT1G53430 42.628 7.42e-66 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo8g02548 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02548 - - pvu:PHAVU_002G046100g 1287.71