Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02526 ATGGACACACCAGAGAGGAACCAGATCAGCGCTACCCTCTCTAAGTTTGAGGATTCACCTGTTTTCAACTATATCAATAGTTTGTCTCCTATAAAGCCCGTTAAGTCTGTTCCCATTAGTCAGACTTTCAATTCACTGAGCTTTTCGTCCCCTCCATCTGTTTTCACATCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTCCTCCGGAGACATATCCCGTTGGGCACATCAAAGCCTAAGGTTTCTTCTGAAGATGTAAATAAAGTTCACTCAAGTGAAGAGACTCTTGCAGATTCTACACGTGCACATCATAACTCAAGTGAATTACAGGAAAACACTGATAAAGGGATTTCAGTAGGAGATGCTTCAATTGAGCTATCTAGCGAGCACATAAAATTTTCAGAAGAGCTACCGCAAGCTTTAAAATATAATTGTGGTAGCCCTGGCTATGAACCTCCACTTTGTGGTAATGAGGCTAATTCTCTTTTGGAATTGCCTGGTGAGGCAGCAACAGATGTTGGCTATGCACAGGAAGGCTGTAAAACAGATTCAGTTGAGGGTGAAGTGCATCTTCAGGAAATATGTCAGATGGAGCCAAAGAGTGAAGGTCCAGACTGTTATTGGGATAGTTTAATTCCTGATGCCCCTGATATGCTAATTTTTAATTCCCCAGGTGATGCAGAAGCTTTAAAGGGTCTAATGCACAAACCGTTGGACTCTTCTATACGACTGAGCGATTTTATGTCTATGCTACCACATTCTACCATCAATAATGGTAGGAAAATACACATTGTTGATTCAGTTGCTTCTGGTTCTGAACATGAAAATGAAGATCATTGTTCTGAGCTGATAACAGCCACAGGAACGGACCAAACACAAGATAATCTTGCCAATGTTGCTTTGGTGACTAGCAATCCAAATGAGAAAGCAAATGACCAGCTTGTTTCTGTCACGCACCGTACCATACGGAGGCGCTGTCTAGACTTTGAGATGGCCAATGTGCAAAGGAAGAACTCTGATGGTAATTCAAACACCGGTTCTAGTACATCTGAGTCTGATGAGAGGAATGTTGCTAATGAAAAGCAACTGCTTCCTGCGAAATGCAATGGGAATTTACAGAGGGGAATTTTGCCAGGAATTGGTCTACACTTGAATGCACTTGCTGCCTTAAAAGAATACAAGGGCATACAAATTGAAAAATTGTCTTCTGGAAGACAACTCAGTCTGCCCAGCTCTACTTCTTTGCAAATCTCTACAAGCCAAGAACATCAGCATCTATCATTGGTACATGTATCATCTGAAAGAGAATTGGATCCATCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGCCATCAGCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAGAAAGAAAAGGCGTAAGTCGGAGACACCAGGAGAAACTGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAATGTTTGAAGCTTTATTGCGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCAAAAGTCATCAGAAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCAAATAAAACTCCAGCTTCGGCACGACACAAAAGAGGATGCAACTGCAAAAAATCAAACTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAATGCTTTCGGTAGAAAGGATGGTTCTGCTCATGTAGGCATAGAAACCGAGCAAGAAGAAACAGAAGCATCTGACAAGGGTGTGGCAGAAAAAGCTTTACAGAAAACTGAAATTCAGAACACTGAAGATCATCCAGATCCTGCTACTGTGTCAACACCATTACGGCTTTCCAGGCCATTGCTTCCGTTGCCCTTTTTATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCTCTGGCTCTGCATTGTTTGTCAGCCAAAAGCTTGGGAAACCAAACCCTCTTTGGTCTCAAGCTAAGCATTTTCAAACAGTTCCAGATGATGAAATGCCGGATATTCTCGGAGGTGATAGCTCTCCTATCACTTGCATCAAAACCTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCCAACTGCGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGGAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2322 0.4311 MDTPERNQISATLSKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHIPLGTSKPKVSSEDVNKVHSSEETLADSTRAHHNSSELQENTDKGISVGDASIELSSEHIKFSEELPQALKYNCGSPGYEPPLCGNEANSLLELPGEAATDVGYAQEGCKTDSVEGEVHLQEICQMEPKSEGPDCYWDSLIPDAPDMLIFNSPGDAEALKGLMHKPLDSSIRLSDFMSMLPHSTINNGRKIHIVDSVASGSEHENEDHCSELITATGTDQTQDNLANVALVTSNPNEKANDQLVSVTHRTIRRRCLDFEMANVQRKNSDGNSNTGSSTSESDERNVANEKQLLPAKCNGNLQRGILPGIGLHLNALAALKEYKGIQIEKLSSGRQLSLPSSTSLQISTSQEHQHLSLVHVSSERELDPSDNGVQPAEDCSQPSAYMAGEDFNQNSPRKKRRKSETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSAHVGIETEQEETEASDKGVAEKALQKTEIQNTEDHPDPATVSTPLRLSRPLLPLPFLSKGKPPRSFVTTISGSALFVSQKLGKPNPLWSQAKHFQTVPDDEMPDILGGDSSPITCIKTSSPNGKRISSPNCDLGSSPSRRGGRKLILQSIPSFPSLTPHP 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02526 773 MobiDBLite consensus disorder prediction 431 484 - -
Pumo8g02526 773 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 772 IPR044522 GO:0003700
Pumo8g02526 773 MobiDBLite consensus disorder prediction 336 354 - -
Pumo8g02526 773 ProSiteProfiles CRC domain profile. 483 608 IPR005172 -
Pumo8g02526 773 MobiDBLite consensus disorder prediction 334 358 - -
Pumo8g02526 773 MobiDBLite consensus disorder prediction 84 111 - -
Pumo8g02526 773 MobiDBLite consensus disorder prediction 731 773 - -
Pumo8g02526 773 MobiDBLite consensus disorder prediction 465 484 - -
Pumo8g02526 773 MobiDBLite consensus disorder prediction 731 748 - -
Pumo8g02526 773 MobiDBLite consensus disorder prediction 77 116 - -
Pumo8g02526 773 SMART CXC_2 568 609 IPR033467 -
Pumo8g02526 773 SMART CXC_2 482 523 IPR033467 -
Pumo8g02526 773 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 571 606 IPR005172 -
Pumo8g02526 773 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 485 520 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02526 Pumo-Chr8 62425070 62430389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02526 16 772 CPP Transcription Factor Family AT4G14770 43.478 1.50e-159 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pumo8g02526 TCR 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02526 - - gmx:100804447 1427.15