Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02502 ATGAATAAGAGTGGGGGAGGAGAGATGAGTAAGTGGCCGTTCACAATGTCTCAGTGGCAGGAACTGGAACATCAAGCTTTGATTTACAAATACATGGTGGCTGGTCTTCCTGTGCCTCCTGATCTAGTCATTCCCATTCAGAACAGCTTCCACTCCATTTCCCAAACCTTCCTGCACCATCCCTCTACCACCATGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGACGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCCTACCCAGACTCCAAGTACTGTGAGCGACACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACACAGTCATCATCCACTGTGACATCATTGACTGTAACTGCTGGCAGCAGCAGCAGTGCAACTGGAAATTTCCAGAACTTTACCACCGCCACAAATGCATATGGTAATCCCCAAGGGACTGGTTCTGGAACAGACCAAACCCACTATCATATGGATTCCATTCCCTATGGGATCCCAAGTAAAGAATACAGGTATTTTCAAGGACCTAAATCTGAGGGAGGTGAACATAGTTTCTTGTCCAAAACTTTAGGAAGCAACAAGGTTCTTCACATGGAGTCACAGATGGATAACACTTTGATGCCAACCGGTGGAGTTGCCTCATTCTCTACATTGAGATCAAATAATAATTCCATGTTGCAGGGTGATTATCTGCAGCCTTCTTTTTTATCTAGTGAATATGCCTCAGGAGAAGCTGTGAAGCAAGAGGGTCGGTCCCTTCGACCTTTCTTTGATGAATGGCCTAAAAGCAGGGACTCATGGTCTGGTCTGGAAGATGAGAGATCCAACCACACAACTTTCTCCACCACTCAACTCTCAATATCCATTCCTATGTCATCATCAAATTTCTCTACAACTAGCTCTCAATCCCCTTTAAATTAG 969 0.4592 MNKSGGGEMSKWPFTMSQWQELEHQALIYKYMVAGLPVPPDLVIPIQNSFHSISQTFLHHPSTTMSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTSLTVTAGSSSSATGNFQNFTTATNAYGNPQGTGSGTDQTHYHMDSIPYGIPSKEYRYFQGPKSEGGEHSFLSKTLGSNKVLHMESQMDNTLMPTGGVASFSTLRSNNNSMLQGDYLQPSFLSSEYASGEAVKQEGRSLRPFFDEWPKSRDSWSGLEDERSNHTTFSTTQLSISIPMSSSNFSTTSSQSPLN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02502 322 MobiDBLite consensus disorder prediction 117 144 - -
Pumo8g02502 322 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Pumo8g02502 322 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo8g02502 322 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo8g02502 322 Pfam WRC 77 119 IPR014977 -
Pumo8g02502 322 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo8g02502 322 PANTHER GROWTH-REGULATING FACTOR 5 10 311 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pumo8g02502 322 MobiDBLite consensus disorder prediction 108 144 - -
Pumo8g02502 322 MobiDBLite consensus disorder prediction 278 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02502 Pumo-Chr8 62181400 62185382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02502 1 119 GRF Transcription Factor Family AT3G13960 58.678 5.23e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pumo8g02502 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02502 - - gmx:100797906 569.311