Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02488 ATGGAGGGAGCATCGTGGAATAGCAGTGTTTGTGTGGCACCGTTTCTGAGCAAGACCTACGACATGGTCGATGATCCTTCCACCGACTCGGTGGTGTCGTGGGGCGAAAACAACAACACCTTTGTTGTCTGGAACGTTCCCCAATTCGCCACACAAATCTTGCCCAAACATTTTAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTGAATACTTATGGTTTTAGAAAGGTTGATCCTGATCGATGGGAATTTGCAAATGAGGGATTTTTAAGAGGTGAAAAACAACTTTTAAAAAGCATCAGTAGGCGGAAAACTGCTCATGTAAATGGTAGTCAACAACCATCTCAAGTGCATAAATCAGCTGTTAGAGCATGTGTTGAAGTGGGGAAATTTGGGCTTGAGGAAGAGGTGGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGTCAGCAGCAAATGATGTCATTCCTGGCAAAGGCCATGCAGAGCCCAGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAATAAACATATCACTGGGAGCAATAAAAAGAGGAGGCTCCACAGGCAAGAAGAAGATAGTTTAGCCACCAAGGATCTCCATAATGTTCTTGATGGACACATTGTCAAGTACCAGAGTTCCATAAATGAGGCTGCAAAAGCATTATTTCGCCAGATATTGCAAATAAACAATTCTACAGCAACACAATCATCAATTAAGAACCCTGATGTCTTCCTTATTGACGATGTTCCTTCTGCCATTGCATCAGATAGCAGTAGTTCATCTACTCAGGTTTCTAATGTGACCCTTTCAATGGTTCCACCTACATCTGAGCTGACATCTATGGAAGTAGGATCACAGTTTCCTCTCAATTGTATGCCCAATAGCATATCTGAGGTGCAGTCTTCACCTGCTGTTTTGGGTTTTTGTAAAAGTCAAGGGATGGAGACAGAAAGCAGTTTAGCAAATCATGATCTGAATGTTATGGGGGCTGATACTAGGAACATGGGGGAGATAGATATGATGTCAACTGTTTTAGATGAGGCAGGCGATGTAGAAGCTGATCATTTTTCACTTGATGCAGACGGAATTTCTAAACTCCCAGAAATCAATGATGAATTCTGGGAACTGTTTTTCAGGCCAAATCCACTTACAGAAGACACAGAGGAAACTAAATGTAGTTCTCTAGGATGTGGTTTAACTGAAGATCAGGGTTTGCCTTCAGAAATGGAAAATAAGCAGGAAAATTTTGATAAGATACAGCATGTTGACCATCTTACTCAACAGATGGGACTTCATGCATTGGACTACTAA 1413 0.419 MEGASWNSSVCVAPFLSKTYDMVDDPSTDSVVSWGENNNTFVVWNVPQFATQILPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGEKQLLKSISRRKTAHVNGSQQPSQVHKSAVRACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESNKHITGSNKKRRLHRQEEDSLATKDLHNVLDGHIVKYQSSINEAAKALFRQILQINNSTATQSSIKNPDVFLIDDVPSAIASDSSSSSTQVSNVTLSMVPPTSELTSMEVGSQFPLNCMPNSISEVQSSPAVLGFCKSQGMETESSLANHDLNVMGADTRNMGEIDMMSTVLDEAGDVEADHFSLDADGISKLPEINDEFWELFFRPNPLTEDTEETKCSSLGCGLTEDQGLPSEMENKQENFDKIQHVDHLTQQMGLHALDY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02488 470 Gene3D - 8 106 IPR036388 -
Pumo8g02488 470 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02488 470 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02488 470 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02488 470 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02488 470 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02488 470 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 296 IPR027725 -
Pumo8g02488 470 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Pumo8g02488 470 FunFam Heat shock transcription factor 1 8 105 - -
Pumo8g02488 470 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g02488 470 Coils Coil 131 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02488 Pumo-Chr8 62038910 62042343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02488 12 465 HSF AT5G16820 52.586 1.19e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo8g02488 HSF_DNA-bind 7.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02488 K09419 - gmx:100793665 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02488 8 62038910 62042343 Pumo8g02488 8 62038910 62042343 ECH
Pumo8g02488 8 62038910 62042343 Pumo3g00836 3 13149486 13151066 PCT