Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02483 ATGGCAGCTATGCGAGAATTTTCCAGAGTCTTACTATCTCACTTAAAACCCAATGCTTCTTCATCTCAACTTCTCTTCCTCCGAACGATGACTTCCAAGGTTTTTGTTAAAGGTTTAGCATTTTCTACAACAGAGGAGGAATTAGCCAAAGCCTTTTCTCAATACGGCAGTGTCCTGAAGGCTGATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGGCATGAATGGAAAGATATTACAGGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGCAAAAGAAATCATTCATTGAGGAGGCATGTGATGGTTGA 375 0.3947 MAAMREFSRVLLSHLKPNASSSQLLFLRTMTSKVFVKGLAFSTTEEELAKAFSQYGSVLKADIILNKAKNRSKGFGYVTFAKEEEACKAQIGMNGKILQGRVIYVDVQLPNKQKKSFIEEACDG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02483 124 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 112 - -
Pumo8g02483 124 SMART rrm1_1 33 106 IPR000504 GO:0003723
Pumo8g02483 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Pumo8g02483 124 Gene3D - 13 117 IPR012677 -
Pumo8g02483 124 SUPERFAMILY RNA-binding domain, RBD 32 114 IPR035979 GO:0003676
Pumo8g02483 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02483 Pumo-Chr8 61973768 61981770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02483 32 107 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.73e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02483 - K13195 gmx:100527061 197.978