Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02478 ATGACGACACCATCTTCCTCCTCAGCTTCGCAATCGCAATTCACCTATTCCAACCCCTCCTACTTCCCTGTGCCCTTTCATCTACAGCAACCCGCAACCACTCACTACGCTGCACCCTATGTTGCTGCTCCGTCCATGCAAATCCCGGCACCTCCCATTGTCGGTCCTGTTGCGCCAGCACCCGTGGCTGGGGTATACTCCACCGTGCCGCAATATCAGGCGCAACAGTTATTTGAGAGGGATGCACAGATAATAACGCCGGAAGCTCTTGAGAATGTTAAGGCAGCAATTGCGAGTAGCGACGTTGAGCACAAAGCAGATGCCAAAAAGAAAGCGGTGCCTCGCAAAGCTGCCGGCCAATCTTGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGATGATTATCGGCTTTTTTGCGGCGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAACTTGGCACGAGTTGTCAGAGATAAGCGGACTGGGAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATAGTTAG 597 0.4941 MTTPSSSSASQSQFTYSNPSYFPVPFHLQQPATTHYAAPYVAAPSMQIPAPPIVGPVAPAPVAGVYSTVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKADAKKKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02478 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 198 IPR000504 GO:0003723
Pumo8g02478 198 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 197 - -
Pumo8g02478 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 197 IPR000504 GO:0003723
Pumo8g02478 198 FunFam RNA-binding protein 42 70 198 - -
Pumo8g02478 198 CDD RRM_RBM42 129 197 IPR034215 -
Pumo8g02478 198 Gene3D - 72 198 IPR012677 -
Pumo8g02478 198 SUPERFAMILY RNA-binding domain, RBD 119 197 IPR035979 GO:0003676
Pumo8g02478 198 SMART rrm1_1 136 198 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02478 Pumo-Chr8 61906361 61908606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02478 137 198 Eukaryotic Initiation Factors Gene Family AT4G34110 35.484 2.64e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02478 K25079 - gmx:100807693 353.214