Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02475 ATGAAGCTGAAGACATATGCGGGTCTTAGTTTCATTGCAACTCTGGCTATTATATATCATGCATTTAACAGTAGGGGCCAGTTTTATCCGGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGGTGTTCTTGGGTTCCCTTCGAGAGGCGGAGGTTGAGAGGCTTAACGAGCAATCGTGGAGGGAGGTTATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTCACATTCCTTGCAATGGTCACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATTGAGACCACTCCTTCAGTGCCCATGTTGTCCCATGTTCGAATTGTATCTTTTATGGGCTTCCTTCTTCTTCTAGATAGCCTTTTCTTATATAGTTCTATGAAGCATTTGATAGAAACATGGCAGGCTTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACCACAACGGTGTCAATTTTTGTAAAATATCTTTTCTATGTCAGTGACTTGCTTATGGAGGGACAATGGGAAAAGAAACCGGTCTTCACATTTTACCTGGAACTCATTAGGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGATATCGTAAAATCACTTCCAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATCATTTGTCGTGAAGAGATGACGACGGCCAAGAAACTCATATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCACACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTGCAGCTGCAGGGCAGCAAGGATCACAGTCAGATGGCCATCAACAGGGAACAACTGGGACAGGCAGTGGAAGCACAGCTCAGACTGAGGTTACTGATAGTTTGAGTCGACATCAAGCTAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTGCGAATTCTTTTGTATGCTCTCCTGGATACACTCTTCATCCCCCGGTTCAAGTATCTCTGGCTGAATCTTCTAATACGGACCGCAATGGAGAGCAAACTTCCAGTGAACAAGCACAAAGGCAGTATGTTATCACTGGTAGACCAACAAATGTATCCTTTCCTCCAATGCAACACTTCCATTTTCTACCTTCCCAAGCACATGCATCCCCTGTGAATTATGGAGAGGGGGTTGGAAATGATCCAAATATCCCAAGCTCTCAGCTTGAAGCTCATTTTCAATGCCAGATTCAGATCCTGCAAAATCAGCTCGAGATTCTGCAGAGGACAAAAGCTGATAAAAGTGTAGATGAGGGCACATCGTCATCAGATAGCAAAGGCAAGAGTGTCATTTCCTCATCATCTGAATCTGGTCATGGTTATCGTGAGGAGATTCAAGATGGAAAAGCATAA 1647 0.4353 MKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSMKHLIETWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDLLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAAGQQGSQSDGHQQGTTGTGSGSTAQTEVTDSLSRHQARLQAAAAAASIYEKSYVYPSANSFVCSPGYTLHPPVQVSLAESSNTDRNGEQTSSEQAQRQYVITGRPTNVSFPPMQHFHFLPSQAHASPVNYGEGVGNDPNIPSSQLEAHFQCQIQILQNQLEILQRTKADKSVDEGTSSSDSKGKSVISSSSESGHGYREEIQDGKA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02475 548 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 263 338 - -
Pumo8g02475 548 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Pumo8g02475 548 MobiDBLite consensus disorder prediction 339 375 - -
Pumo8g02475 548 CDD RING-H2_synoviolin 288 329 - -
Pumo8g02475 548 SMART ring_2 291 328 IPR001841 -
Pumo8g02475 548 MobiDBLite consensus disorder prediction 509 548 - -
Pumo8g02475 548 Coils Coil 488 515 - -
Pumo8g02475 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Pumo8g02475 548 MobiDBLite consensus disorder prediction 520 537 - -
Pumo8g02475 548 PANTHER RING ZINC FINGER PROTEIN 1 521 - -
Pumo8g02475 548 SUPERFAMILY RING/U-box 271 335 - -
Pumo8g02475 548 Pfam Ring finger domain 290 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02475 Pumo-Chr8 61887993 61893474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02475 1 532 C3H Transcription Factor Family AT3G16090 64.925 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02475 K10601 - gmx:100816441 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02475 8 61887993 61893474 Pumo8g02475 8 61887993 61893474 ECH