Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02466 ATGGATGAGGGGAAGCATAAATCGAGGAAAGAAAATCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGTGACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAAGGATGGGAGGCACAGGGATAGAGAGAAGAGGGACCGTGAGTCCCGAAGACATGAGAGAGAGAGGAGTACCGATTCTGAAGACAGGTATGATAGAGACAGGGAGAAGCGCAAAGATAAAGATAGGGATGTGGACAGAGAAAGAGGTCGAGACAAGAAAAGGGAAAGGGATAGGGAAGACAGAGTAAGGGAGAAAGAAAGAGAGAGGGAAAGAAAAGAGGATAAGGAGAGGATCAGAGAGAGAGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGGGAGGAGAGCACGGGAAAGGGAGAAGCGTAGGGAAGTTGATAGTGATTACAGTGATGGTGAATCTAAGGAGAGGGATAGAAAGCGGCATAGGAAAGAGGATGGTGATTACAAGAAGAGAGAGACGGAAAGGAGTGTCAGCAAGCCAAGCAGGCAATCTGAGGAACATGAAGGAAGCCCAAGAAAAAAGAGTGGCGGAGATGATTTGGATACCAAAGATGAAGAGAGAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTACGGAGGAAGAAGGAAGAAGCAGATAGAGAAAAACACGGTGAAGCAAGTGCTAATGAACCCGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGACCAGGCACTGGGAAGCAGGATACAGGTATGGATGTAGATGAAGATGACCAACCAGCTGATAACAAACCTAAGGATGCGATGGTGGTAGACACTGATAATGGGACAATTGCATCTGATTTACAGGATGGAACTGCGGGTGCTCCTGAAGATGAGGAAATAGATCCATTGGACGCTTTCATGAATTCTATGGTTCTACCCGAAGTTGAAAAGCTAAACAATGCTGTGACATCGTCAATTTCTGATAAAGCCGTTGACATAAAACCCAAAGATAAAGGGAATGAGCAAAGTCATGGTGCACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGCCGAATAATTCCTGGTGAAGACTCTGACTCAGATTATGCAGATGATGAGGTTGAGAGGGATCCATTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCCGAGAAGCTTTCTTTAGTTGACCACTCAAAGATTGACTATGAACCATTCAAGAAAATTTTTTATATTGAAGTGAAGGAGATCTCAAAGATGACTCCCGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGCACCAGACTGGACTTGCTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGAAAAGCCGATGCCTATTCAAGCTCAGGCTCTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGTGTTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTACCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCTAAGGTACTGGGTGTAAGATGTGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCCGAGATTGTGGTTTGTACTCCCGGTAGGATGATTGACATACTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGTCCGGATCGTCAAACAGTTCTGTTCTCTGCTACTTTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTTGAGGTGAGGCTGGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAGAAAGGAAAGATTCTGATATTTGTTCACTCACAGGAGAAATGTGATAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACTGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACGAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTAGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTTCACCGTGTTGGGCGCACTGGTCGAGCTGGCCGAAAGGGGTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAACTATCTGAGCAGATTGTTCCCAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGAGAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCTCAGCATTCTGCTTTTGCTCAGATTATTGCTGCCACTAAAGGGAATGCTCCTGCATTGTCTACTCCAATACTCCTACCTGTTTCCTTGCCGGTCTTGCCCGGGACAGGGCTCCCTCTTCCTGCAAACGATGGGGCAGCTCGAGCAGCAGCAATTGCTGCTCTAAACTTGCAGGACAAGTTAGATAAAATACGATCAGAAGCATTACCAGAGCATTACGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACACACAAGGAAACTTTAGGTCCTATTTCTGAATGGACTGGAGCTGCCATTACCACCAGGGGGCAGTTTTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGTTGTCTGTTAAGACAGCTAAAGCAGACTTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAACTCAACCGGGCAAATACTCTGTTGTGTAA 3342 0.4458 MDEGKHKSRKENHEVKDGDSKRSHRDRDRDRTGERGKDKKDGRHRDREKRDRESRRHERERSTDSEDRYDRDREKRKDKDRDVDRERGRDKKRERDREDRVREKERERERKEDKERIRERERERERERERRDHEREKEKERERGRRAREREKRREVDSDYSDGESKERDRKRHRKEDGDYKKRETERSVSKPSRQSEEHEGSPRKKSGGDDLDTKDEERKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKKEEADREKHGEASANEPESGKTWTLEGESDDEEGPGTGKQDTGMDVDEDDQPADNKPKDAMVVDTDNGTIASDLQDGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSSISDKAVDIKPKDKGNEQSHGAQSRKGSNKSIGRIIPGEDSDSDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKIFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPVKSWHQTGLASKILETIKKMNFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGVRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRLDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQIIAATKGNAPALSTPILLPVSLPVLPGTGLPLPANDGAARAAAIAALNLQDKLDKIRSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTELSVKTAKADLKRVLEDITNQALQLPGGTQPGKYSVV 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02466 1113 MobiDBLite consensus disorder prediction 371 385 - -
Pumo8g02466 1113 CDD KH-I_AtRH42_like 1011 1112 - -
Pumo8g02466 1113 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 729 873 IPR001650 -
Pumo8g02466 1113 Pfam DEAD/DEAH box helicase 517 688 IPR011545 GO:0003676|GO:0005524
Pumo8g02466 1113 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 701 IPR014001 -
Pumo8g02466 1113 MobiDBLite consensus disorder prediction 908 922 - -
Pumo8g02466 1113 CDD DEADc_DDX46 481 702 - -
Pumo8g02466 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 874 IPR027417 -
Pumo8g02466 1113 MobiDBLite consensus disorder prediction 1 269 - -
Pumo8g02466 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 703 IPR027417 -
Pumo8g02466 1113 Coils Coil 224 258 - -
Pumo8g02466 1113 MobiDBLite consensus disorder prediction 908 937 - -
Pumo8g02466 1113 MobiDBLite consensus disorder prediction 277 315 - -
Pumo8g02466 1113 MobiDBLite consensus disorder prediction 1 347 - -
Pumo8g02466 1113 SMART helicmild6 753 834 IPR001650 -
Pumo8g02466 1113 FunFam probable ATP-dependent RNA helicase DDX17 454 704 - -
Pumo8g02466 1113 Coils Coil 94 150 - -
Pumo8g02466 1113 MobiDBLite consensus disorder prediction 365 426 - -
Pumo8g02466 1113 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 492 520 IPR014014 GO:0003724
Pumo8g02466 1113 MobiDBLite consensus disorder prediction 407 422 - -
Pumo8g02466 1113 Gene3D - 702 876 IPR027417 -
Pumo8g02466 1113 Gene3D - 444 701 IPR027417 -
Pumo8g02466 1113 PANTHER RNA HELICASE 437 914 - -
Pumo8g02466 1113 CDD SF2_C_DEAD 713 843 - -
Pumo8g02466 1113 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 647 655 IPR000629 -
Pumo8g02466 1113 SMART ultradead3 511 716 IPR014001 -
Pumo8g02466 1113 Pfam Helicase conserved C-terminal domain 726 834 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02466 Pumo-Chr8 61790081 61805536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02466 479 854 Eukaryotic Initiation Factors Gene Family AT3G19760 31.842 5.02e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02466 K12811 - gmx:100784306 1775.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02466 8 61790081 61805536 Pumo8g02466 8 61790081 61805536 ECH