Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02452 ATGTCACATAGGAATATTGTTTCTTGGACTGCTCTCATTTCGGGGTATGCCCAATCTGGCCTAATCAGAGAGTGTTTCTCTCTCTTTTCTGGCTTGCTGGCTCAATTTCGCCCAAACGAATTTGCTTTTGCAAGTTTGCTTAGTGCGTGTGAAGAGCATGACATTAAGTGTGGCATGCAGGTACATGCAGTTGCTTTGAAAATTTCTTTGGATGCCAATGTATATGTTGCAAATGCTCTTATTACAATGTATAGCAAGCACTCTGGTTCCGGTGGAAGTTATGATCAGACACCGGCTGATGCGTGGACCATGTTCAAGTCAATGGAGTTCCGAAATCTTGTATCTTGGAATTCAATGATTGCAGGTTTTCAACTTCGTGGACTTGGGGACAAAGCCATTCGCCTCTTTGCACATATGTACTGCAATGGAATTGGGTTTGACCGTGCCACGCTACTTAGTGTCTTTTCTTCACTAAATGAATGTGGTGCTTTTGATGACATTAACATACATCTCAGGAAATGTTTTCAATTGCACTGTCTCACTATTAAAAGTGGTCTTATTTCAGAAATTGAAGTGGTAACTGCATTGATAAAATCCTATGCAAATCTTGGAGGACACATTTCCGACTGTTATAGAATCTTCCTTGATACAAGTAGCCAACTGGATATTGTGTCATGGACTGCTCTTATTTCTGTGTTTGCAGAACGGGATCCTGAGCAAGCTTTCCTCCTTTTTTGCCAACTTCATCGTCAAAATTATTTGCCAGACTGGTATACATTCTCTATTGCTTTAAAAGCTTGTGCACACTTTGTGACTGAGCAACATGCCATGGCTATTCACTCACAAGTAATTAAAAAAGGGTTTCAGGAAGATACTGTTCTTTGTAATGCCTTGATACATGCTTATGCAAGGTGTGGCTCCTTAGCTTTGTCGGAACAAGTATTCAATGAAATGGGCTGCCGTGATTTGGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATACATGGTCAAGCTAAAGATGCACTGGAGCTCTTCGAGAGAATGAATGTCTGTCCAGATTCTGCAACCTTCGTCGCGCTTCTCTCAGCTTGCAGTCATGTTGGACTTGTTGACGAAGGAGTGAAATTGTTTAACTCTATGTCTGATGATCATGGTGTTGTTCCTCAACTAGATCACTATTCCTGCATGGTTGACCTTTATGGACGAGCTGGGAAGATATTTGAGGCTGAGGAGTTGATACGTAAAATGCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCCGAAAGCATGGTGAGACTCGCTTGGCCAAATTAGCAGCTGATAAATTTAAAGAGTTAGAACCAAACAATTCATTGGGATATGTACAAATATCAAACATATATTCCTCTGGCGGTAGTTTTACAAAAGCTAGCCTGATTAGGAAGGAAATGAGTGACTATAAAGTGAGAAAAGAACCTGGATTAAGCTGGGTTGAGATTGGGAAGCAGTTTCATGAATTTGGCTCTGGTGGTCAATATCATCCAAACAGAGGGGCAATATTAAGCCGGCTTGAGATAGTGATTGGACAATTGAAAGAGATGGGTTATGTGCCAGAGCTTAGCTTAGCCTTGTATGACACGGAAGTGGAGCACAAAGAAGACCAATTGCTTCATCACAGTGAGAAGATGGCATTGGTATTTGCCATAATGAACGAAGGAAGTTTGCCTTGTGGTGGGAATGTCATTAAAATAATGAAGAATATTCGTATTTGCGTGGATTGCCACAACTTCATGAAATTAGCATCACATCTATTTCAGAAGGAGATTGTTGTGAGAGATTCAAACCGTTTTCACCACTTCAAATATGCAACATGCTCTTGTAATGACTATTGGTAA 1893 0.4062 MSHRNIVSWTALISGYAQSGLIRECFSLFSGLLAQFRPNEFAFASLLSACEEHDIKCGMQVHAVALKISLDANVYVANALITMYSKHSGSGGSYDQTPADAWTMFKSMEFRNLVSWNSMIAGFQLRGLGDKAIRLFAHMYCNGIGFDRATLLSVFSSLNECGAFDDINIHLRKCFQLHCLTIKSGLISEIEVVTALIKSYANLGGHISDCYRIFLDTSSQLDIVSWTALISVFAERDPEQAFLLFCQLHRQNYLPDWYTFSIALKACAHFVTEQHAMAIHSQVIKKGFQEDTVLCNALIHAYARCGSLALSEQVFNEMGCRDLVSWNSMLKSYAIHGQAKDALELFERMNVCPDSATFVALLSACSHVGLVDEGVKLFNSMSDDHGVVPQLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGETRLAKLAADKFKELEPNNSLGYVQISNIYSSGGSFTKASLIRKEMSDYKVRKEPGLSWVEIGKQFHEFGSGGQYHPNRGAILSRLEIVIGQLKEMGYVPELSLALYDTEVEHKEDQLLHHSEKMALVFAIMNEGSLPCGGNVIKIMKNIRICVDCHNFMKLASHLFQKEIVVRDSNRFHHFKYATCSCNDYW 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02452 630 Gene3D Tetratricopeptide repeat domain 352 506 IPR011990 GO:0005515
Pumo8g02452 630 Gene3D Tetratricopeptide repeat domain 235 351 IPR011990 GO:0005515
Pumo8g02452 630 Gene3D Tetratricopeptide repeat domain 56 176 IPR011990 GO:0005515
Pumo8g02452 630 Gene3D Tetratricopeptide repeat domain 1 55 IPR011990 GO:0005515
Pumo8g02452 630 Pfam PPR repeat family 222 268 IPR002885 -
Pumo8g02452 630 FunFam Pentatricopeptide repeat-containing protein mitochondrial 56 174 - -
Pumo8g02452 630 Pfam E motif 436 498 IPR046848 -
Pumo8g02452 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Pumo8g02452 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 389 IPR002885 -
Pumo8g02452 630 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 563 IPR046960 GO:0003723|GO:0009451
Pumo8g02452 630 FunFam Pentatricopeptide repeat-containing protein At2g34400 280 524 - -
Pumo8g02452 630 Pfam DYW family of nucleic acid deaminases 534 630 IPR032867 GO:0008270
Pumo8g02452 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Pumo8g02452 630 NCBIfam pentatricopeptide repeat 114 145 IPR002885 -
Pumo8g02452 630 NCBIfam pentatricopeptide repeat 357 389 IPR002885 -
Pumo8g02452 630 NCBIfam pentatricopeptide repeat 293 322 IPR002885 -
Pumo8g02452 630 NCBIfam pentatricopeptide repeat 394 417 IPR002885 -
Pumo8g02452 630 NCBIfam pentatricopeptide repeat 324 349 IPR002885 -
Pumo8g02452 630 Pfam PPR repeat 7 30 IPR002885 -
Pumo8g02452 630 Pfam PPR repeat 114 144 IPR002885 -
Pumo8g02452 630 Pfam PPR repeat 324 349 IPR002885 -
Pumo8g02452 630 Pfam PPR repeat 357 383 IPR002885 -
Pumo8g02452 630 Pfam PPR repeat 393 418 IPR002885 -
Pumo8g02452 630 Pfam Pentatricopeptide repeat domain 282 318 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02452 Pumo-Chr8 61648163 61650315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02452 1 630 Glycoside Hydrolase AT3G49170 37.792 1.25e-131 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02452 - - gmx:100799117 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02452 8 61648163 61650315 Pumo3g00849 3 13287755 13296557 PCT