Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02443 ATGAGTGATTGCATGGACATGCCTTCTTCAAGTTCAAGCCATGTTGTTGGTGCTGCTTCTTCGGCATATCGTGGTGTCCGCAAGAGGAAATGGGGGAAGTGGGTGTCCGAAATCCGCGAGCCAGGAACCAAGACCAGAATCTGGCTCGGGAGTTTCGAAACTCCCGAGATGGCAGCAGCAGCATACGACGTCGCAGCGTTGCATTTCAGGGGCCGCGACGCCAGGCTCAACTTCCCTCAGCTCGCCAGCACGCTGCCGCGCCCCGTCAGCAACAATGCTGACCACATACGCATGGCGGCGCACGAGGCCGCGCTCAGGCTCCGGACCAACCCAGGCCCGCCGGAGACCGGTGGCTCCGCCGGTTCCGCCGCCGCGGCTCCACTCACGGTAAGGCTCTCCCCCACTCAGATTCAGGCCATCAATGACTCCCCTATGGACTCACCGACTTGGATGCAAATGCCTGACACGTTCATGATGCATGATCAGTCCATGATGTTCGCAAATGGGTATTCCTTTGAAGACAACGAGTGGGAGGATATGCAGAATGATTCTCTTTGGGATCCTTAG 567 0.5802 MSDCMDMPSSSSSHVVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPQLASTLPRPVSNNADHIRMAAHEAALRLRTNPGPPETGGSAGSAAAAPLTVRLSPTQIQAINDSPMDSPTWMQMPDTFMMHDQSMMFANGYSFEDNEWEDMQNDSLWDP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02443 188 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pumo8g02443 188 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Pumo8g02443 188 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pumo8g02443 188 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Pumo8g02443 188 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pumo8g02443 188 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Pumo8g02443 188 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Pumo8g02443 188 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Pumo8g02443 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 164 - -
Pumo8g02443 188 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02443 Pumo-Chr8 61575554 61576120 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02443 21 188 AP2-EREBP Transcription Factor Family AT1G71450 64.118 4.64e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g02443 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02443 - - gmx:100815719 335.109