Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02438 ATGAGTAGAAGTTTAGCGCTGCATGGAACAAGCACAAACAGGGACAAGAAGTTGAAGGGAGTTCGGCGTCGCAAATGGGGAAAGTGGGTGTCGGAGATTCGTGTTCCAGGCACGCAAGAGCGTTTGTGGTTGGGAACCTACGCCACGCCGGAGGCTGCCGCCGTGGCTCACGACGTTGCCGTTTACTGTCTGAGGAGGCCTTCTTCGTTGGACAAACTTAACTTCCCCGAGACCTTGTCTTCTTACAGTGTTCAGCTCAGGGACATGTCTCCGAGGTCCGTGCAGAAGGTGGCTTCCGATGTTGGCATGGATGTTGATGCCAGAAACATTGTTGCTGCAGCCAAAACTTCAACGGTGGTCGGGCCAGAAACTTACGAGAGTGAGAAGAAAATTGATGACACCAATGTTGTTGGAGCAGGTGGTGCTGATGTGTTTTGGTGGGATGATTGGTATGGAAGTGATGGAGGAGATTGTACAGAAAGGGAGGCTTTGAGCATTTCCATTGAAGATTATCTTTAG 519 0.5067 MSRSLALHGTSTNRDKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLRRPSSLDKLNFPETLSSYSVQLRDMSPRSVQKVASDVGMDVDARNIVAAAKTSTVVGPETYESEKKIDDTNVVGAGGADVFWWDDWYGSDGGDCTEREALSISIEDYL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02438 172 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Pumo8g02438 172 SMART rav1_2 17 82 IPR001471 GO:0003700|GO:0006355
Pumo8g02438 172 Gene3D AP2/ERF domain 17 78 IPR036955 GO:0003700|GO:0006355
Pumo8g02438 172 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Pumo8g02438 172 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Pumo8g02438 172 CDD AP2 16 78 IPR001471 GO:0003700|GO:0006355
Pumo8g02438 172 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Pumo8g02438 172 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Pumo8g02438 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02438 Pumo-Chr8 61531011 61531529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02438 17 107 AP2-EREBP Transcription Factor Family AT1G71520 65.591 2.12e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g02438 AP2 5.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02438 - - gmx:100816257 244.588