Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02413 ATGAGAAGGGTTACAGACGTAGAAGCTCATGGCGGCATGGTTAAGCGGTGTTTGGATCAGGTGGGGGTGGTGCGTCTGGTGGTGGAAGGAGTGGGGTTAGGGGTTATGGCGGACGTCATGGTAATGAAAGAGATTGAAGACACGGCGCTGCGTCTTGGTGTCGATCTCTCCACTCTCAATCTCGATGCCATTGGTCTTTCTCTGGACAAAAATTGCGGCATAGTCAGTGATGAGGATATTTACCAAGAGGATAATCTCGAGTTTGAATCTGGATTTGACAACATCATAGTCGTGGATAACCTTCCTGTCGTTCCGAGGGAGAAGTTTGATAAACTGGAAGGAGTGGTTCGGAAAATTTATAGTCAGATTGGTCTTATTAAAGAGGATGGCCTCTGGATACCGGTTGATTCTGAAACTGAGAAAACCCTGGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTCGCCAAGGAGAAGACCCATGGGTATAGATTAGACCGTGCACACATGTTTTCCGTGAATGTGTTTGATGACTTTGACAGGTTTATGAAGGTTCCCAGTGAGTGGGCTCCTTCTGAAACCAAGGCCTATGCTCCAGGGGAAAATATTCAACACTGGCTCACTGATGGAAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTCTTGTGGAATGACGCAAGGCATTTAAAGCCTGATCCCGTTTATAAGCGTGCATTTTGGACTGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATACTTGGCCACTGTTCACAGACAGGGGGCAGCAGTCTGGGGAGGTGCTACAAGCTTTAATAGACTTATGCGTTATGCGCATCCTCAGGTTTTCTGA 876 0.4749 MRRVTDVEAHGGMVKRCLDQVGVVRLVVEGVGLGVMADVMVMKEIEDTALRLGVDLSTLNLDAIGLSLDKNCGIVSDEDIYQEDNLEFESGFDNIIVVDNLPVVPREKFDKLEGVVRKIYSQIGLIKEDGLWIPVDSETEKTLGYCFIEYNTPQEAELAKEKTHGYRLDRAHMFSVNVFDDFDRFMKVPSEWAPSETKAYAPGENIQHWLTDGKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATSFNRLMRYAHPQVF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02413 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 181 IPR000504 GO:0003723
Pumo8g02413 291 CDD RRM_eIF3B 93 177 IPR034363 -
Pumo8g02413 291 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 77 290 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo8g02413 291 SUPERFAMILY RNA-binding domain, RBD 84 170 IPR035979 GO:0003676
Pumo8g02413 291 Gene3D - 89 188 IPR012677 -
Pumo8g02413 291 FunFam Eukaryotic translation initiation factor 3 subunit B 89 188 - -
Pumo8g02413 291 SMART rrm1_1 95 177 IPR000504 GO:0003723
Pumo8g02413 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 169 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02413 40 290 Eukaryotic Initiation Factors Gene Family AT5G27640 63.889 1.42e-119 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02413 K03253 - gmx:100817394 476.863