Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02407 ATGTTGTGTCTAATAGTGTTGATTATGTTTGTTCTCCCTCTGAGAGGGGAACTAATTTGCAACACCGTGTCATGCGGTAGAATCAATATTCAGTTTCCTTTCGGTTTGAAAGAAACCAATCAAAGTTCTCGTCGGTGTAGCTACCCCAGATTCCAACTTTCGTGTGACAACCTTAACCGAACCATTCTCAGCCTCCCAGGTGGTTCGGGGGATTTGGTTGTTAAAAGCGTCAATTACAAGGCCCAAACGGTTAAGGTTAACGACCCCGAAGGTTGTCTCCCAAAACGTTTTTTGCACAACAACTTGAGCCTTTCCCTGCACCCACCATTCACGTTTGACGCAACCGTTTACGACCTAACCTTCATTCGTTGCCCATCCAACATAACAGACTCGATTCCATTCCCACCAATTTCATGCCTCAGCGAATCCAAGTCCAACAACTCCTCATCGGTGATATTTCCGTGGTGGCCTCTTACTCTTAGTGACACGTCACCGTGGCGTGATGACTGTGAGGTGATATCCTCGGCTTTTGTTCCCGTTCCAAATCCAGACACGACGTCGTTTTTTATGCCCGATCTTAACGATGATATTGAGTTGAAGTGGAACGATCCCGCGTGTGGGGATTGTGCTAGTCGTGGCCAGGTTTGTGGATTCGCCGGAGACACGGGTCTACAAGTTGGATGCTTCTTCTCTTCTCCAAACGAAAGCCAAGGTCTTGCAAGAAGCGCCAAATATGGCTTAACGATAGGAGTGGGAATACCTGGACTCTTGTGTTTAACTGGGCTTTGCTGCTTTATGTGCAGTAAATTCGATGTGTACTCACATGGTCACCGGGCCAGGCCCAGCACTGAGCTGCCGAGCTCCATTACTACACTACCACCGCCCTCGTTCATAATGGGCCTTAATGGGCCAGAAATTGAAAAATTCCCCAAGACTCTTATTGGTGACAGTGGGCGCTTACCGAATTCGAACGATAACACGTGCCCAATATGCCTCTCCGAATACGAGCCCAAGGAGACATTGAGGACCATTCCTGCGTGCAACCATTATTTTCATGCACACTGCATAGATGAGTGGCTCAAGATGAACGCTACGTGCCCCTTATGCAGAAATTCACCGGATGCATCCTCTACTGTTACTCCTTCTTCTTCTTCATTATCTATCTATTCGTCTTCACCATAG 1182 0.4755 MLCLIVLIMFVLPLRGELICNTVSCGRINIQFPFGLKETNQSSRRCSYPRFQLSCDNLNRTILSLPGGSGDLVVKSVNYKAQTVKVNDPEGCLPKRFLHNNLSLSLHPPFTFDATVYDLTFIRCPSNITDSIPFPPISCLSESKSNNSSSVIFPWWPLTLSDTSPWRDDCEVISSAFVPVPNPDTTSFFMPDLNDDIELKWNDPACGDCASRGQVCGFAGDTGLQVGCFFSSPNESQGLARSAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYSHGHRARPSTELPSSITTLPPPSFIMGLNGPEIEKFPKTLIGDSGRLPNSNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRNSPDASSTVTPSSSSLSIYSSSP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02407 393 Pfam Ring finger domain 326 370 IPR001841 -
Pumo8g02407 393 CDD RING-H2_EL5-like 328 370 - -
Pumo8g02407 393 SMART ring_2 328 369 IPR001841 -
Pumo8g02407 393 Pfam Wall-associated receptor kinase galacturonan-binding 20 88 IPR025287 GO:0030247
Pumo8g02407 393 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 373 IPR046948 -
Pumo8g02407 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 375 IPR013083 -
Pumo8g02407 393 ProSiteProfiles Zinc finger RING-type profile. 328 370 IPR001841 -
Pumo8g02407 393 MobiDBLite consensus disorder prediction 372 393 - -
Pumo8g02407 393 SUPERFAMILY RING/U-box 322 374 - -
Pumo8g02407 393 Pfam Wall-associated receptor kinase C-terminal 139 231 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02407 Pumo-Chr8 61306922 61313444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02407 20 373 C3H Transcription Factor Family AT2G46495 34.986 5.68e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02407 - - ahf:112732430 368.622