Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02398 ATGGCAAACAAATTCCACTCTGTTGCGGAGATTACTCCCGAGAAGCAAAACTGGAAAATCATGGTGAGAGTCATACGGCTATGGGTGGTGAAAGACTTAGGAAAGTCAAAGATACCTTTCTCAATGGAATTGTTGCTGGTGGATTCAAAGGGAGTTCGAATCCACGCTTCTCTGAGAAAGACGGTCATTTACAAATTTCAGAAAGATTTACGAGAAGGCAGTGTATACTCCATTCGAACATTTGATGTGGCTGAAAATAGTGGTACTTTTAGAACATCCACTCATAAGTACAAGATTAACTTCAATTTGAATACTAAAATAGAAGAGTTGGATAAAGCTTTGGTACCTGAAAAAAACTGTGACTTTGTGGCTATTCGTAAGATTATTGGTGGTGAATGGGATGATGATTACTTAGTGGGTAGGTGTAATTTTTTGTTCAATGTTTATAACGAGCTGAACACTTTCCTTGCTTCTGGAGATGTGAATAGCACTATTGTAATTGTCCATTTAGCGAAAGTGAAATGCTTTCAAGACAAGATACATCTTCAGAATTGTATGGTCTGTACAAAGTTGATTTTTAAACCAAAATGTGAGGAAGTGATGAAGCTTGCTAAAAGGATGCTGGACAATATGGAGTCACCATCTCAAGGTCTTAGCCAATTGACAGATTCAGGAAAAGTTAGTATGGAAGAAGATTTTCTTGAATTGACAACAAAAAAAACCATTAAGGGTCTTAAAGACTGCAAAGAGGAGTCTTCGTATGCAGTTTTTGCTACTGTCAACAACATAATGGAAGATGAAGATTGGTTTTATACTGCCTGTCTCTGCAATAAGGGTGTTTATCCAGACTCTCAAATGTGGTATAGGATCAAGGTCAGGGTCACTGATCATACTGATTCTGCAACTTTTGTGATTTTTGACCGGGATGCTACCATGCTATTCAACAAATCATGTACTGACATGTATGAAGAGCAAGAGAAGAAAGGAAACAGTCGAGGACTTCCCAAAGAAATTTCTGACTTGGAAGGCAAAAGCTTTATTTTTAAAGTAGATTTTAGAAATGGTACCAGCTCAAAATTTGAACAATCTTTTAGAGTTAAGAAGATTTGTGATGATGTGTTGATTATGAAAAGGTTTAAGGAATATTTGGCTACATCTATTGAAGCCAACATGGATGTTCAACCCATGGATTTTGCTCAGGACTTAATGCCTAAGTTTTCTATGGTTGGTGTGGATAATGAAAATGATTCTCAAATGGATGAAATACAAATAGCAGATCTGTCAAAGGATTCACAGGACTTTACTCCTTTGAAGGCTAACTTGGCAAGTCCAAACCAAGGAGGGAGTTTGATTGGGTCTGACTCTCAACATAAGGAACAATTTGATGAAGCCCAAACTGATTCTGCAGAACTTTTTTCTCCTATTGGAACTGGATTTGCATCTCAGGATGTAACTCCTATTGGAACTTCATGTAGCATTAAACTGAATGAACCACATCCTGAGACACCAAAAGCCAAAACTGAAGCTGCTCTTAGTACACAGTGTGTGCCTGGAAAAAGGCAGCTAGACCTTGATGTTCCACTGAAGGGTTTGAGGAAGAAAATCAAGATTGAGAAGCTTTAA 1623 0.3777 MANKFHSVAEITPEKQNWKIMVRVIRLWVVKDLGKSKIPFSMELLLVDSKGVRIHASLRKTVIYKFQKDLREGSVYSIRTFDVAENSGTFRTSTHKYKINFNLNTKIEELDKALVPEKNCDFVAIRKIIGGEWDDDYLVGRCNFLFNVYNELNTFLASGDVNSTIVIVHLAKVKCFQDKIHLQNCMVCTKLIFKPKCEEVMKLAKRMLDNMESPSQGLSQLTDSGKVSMEEDFLELTTKKTIKGLKDCKEESSYAVFATVNNIMEDEDWFYTACLCNKGVYPDSQMWYRIKVRVTDHTDSATFVIFDRDATMLFNKSCTDMYEEQEKKGNSRGLPKEISDLEGKSFIFKVDFRNGTSSKFEQSFRVKKICDDVLIMKRFKEYLATSIEANMDVQPMDFAQDLMPKFSMVGVDNENDSQMDEIQIADLSKDSQDFTPLKANLASPNQGGSLIGSDSQHKEQFDEAQTDSAELFSPIGTGFASQDVTPIGTSCSIKLNEPHPETPKAKTEAALSTQCVPGKRQLDLDVPLKGLRKKIKIEKL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02398 540 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Pumo8g02398 540 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
Pumo8g02398 540 CDD RPA1_DBD_C 239 388 IPR047192 -
Pumo8g02398 540 CDD RPA1_DBD_A_like 19 107 - -
Pumo8g02398 540 PANTHER OS03G0429900 PROTEIN 162 369 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo8g02398 540 Gene3D - 5 112 IPR012340 -
Pumo8g02398 540 SUPERFAMILY Nucleic acid-binding proteins 240 373 IPR012340 -
Pumo8g02398 540 Gene3D - 223 388 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02398 Pumo-Chr8 61217257 61219782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02398 1 350 Core DNA Replication Machinery Family AT5G08020 21.446 5.11e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02398 - - vun:114165619 379.022