Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02395 ATGGACGGAATGAGAGAAACAAACTCACAGCTTGAACTCCAAGAGGGTACTAATATTGGATCCTCTTTATCAAAGCTCATATTAACAAGTGGCACAAACACCCTCGACTCAATTTTCTCCAATTGCCCCCCACCAAGTGTGTTGGATTACATGGAACCCTTTGGGTCTTCGGGGTATGAGCCTTTGGGGTCTTCCGTGTACCTCCGACAAAGAGACATCCTCCAAAAGTTCTACCAAGAAAGCCGAGGAAATGGGAATGGGAATGGGTCTTGCTTGGCAAACCCGTCTGTTTACACGAGTTCGTTGAGTTGTTATTCTTTGACGAAGCCTTGCAAGAAAAAGCTGTACAGGGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCGGAAATTAGACTCCCCCAGAACAGGATGAGAGTGTGGTTGGGTACCTACGACACGGCCGAAGCTGCTGCCTACGCCTACGATCGCGCCGCGTATAAGCTCCGTGGAGAGTACGCGCGTTTGAACTTCCCCAATCTCAAGGACCCCACCAAGCTAGGCTTCGGAGACTCCGCCAGATTGAACGCCTTGAAGACCTCCGTCGACGCCAAAATTCAAGCCATATGCCAAAAGGTGAAAAGGGAGAGAGCCAAAAAGAATGCCGCCAAGAAGCTCATGAGTTCGGCCACCGCTGACCCTAACCGCGGGCAGAGTGACAAGTCCTCGCAGCCGTTGATCAACTCCTCTTCTTGCTCCCAGCCGTCCATTTTTTACGATAATTGGGCCAACGAGTTGTTTTCGCCGACGCTTTCAGAGGATGGGATTTGGAAGGGGCAGAATTCGCCGGCCTCGGTTTCCACGGAGGAAACAGAGTTGTTCGAACCTTGTTCTCTGGCTAGACTGCCTTCCTTCGATCCCGAGTTGATTTGGGAGGTTCTGGCCGTTTAA 930 0.5151 MDGMRETNSQLELQEGTNIGSSLSKLILTSGTNTLDSIFSNCPPPSVLDYMEPFGSSGYEPLGSSVYLRQRDILQKFYQESRGNGNGNGSCLANPSVYTSSLSCYSLTKPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSARLNALKTSVDAKIQAICQKVKRERAKKNAAKKLMSSATADPNRGQSDKSSQPLINSSSCSQPSIFYDNWANELFSPTLSEDGIWKGQNSPASVSTEETELFEPCSLARLPSFDPELIWEVLAV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02395 309 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700|GO:0006355
Pumo8g02395 309 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Pumo8g02395 309 MobiDBLite consensus disorder prediction 213 242 - -
Pumo8g02395 309 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Pumo8g02395 309 MobiDBLite consensus disorder prediction 224 242 - -
Pumo8g02395 309 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Pumo8g02395 309 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Pumo8g02395 309 FunFam Ethylene-responsive transcription factor 2 114 173 - -
Pumo8g02395 309 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Pumo8g02395 309 CDD AP2 114 174 IPR001471 GO:0003700|GO:0006355
Pumo8g02395 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 40 307 - -
Pumo8g02395 309 SUPERFAMILY DNA-binding domain 115 172 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02395 Pumo-Chr8 61154976 61156185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02395 17 308 AP2-EREBP Transcription Factor Family AT1G64380 47.198 8.49e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g02395 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02395 - - gmx:100785364 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02395 8 61154976 61156185 Pumo8g02395 8 61154976 61156185 ECH