Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02394 ATGTCCACCACCGCAACTACAAACTCTGAAGAAGTGAGCAGCAATGAGTGGAAAGTGATACAGATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCGGGTCGCATTCCCGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGCTGATGCTTTCTCTGTTAAAAGAAACGCAAGTAAAGCCGAAGACTCATGA 243 0.4609 MSTTATTNSEEVSSNEWKVIQMSEQEEDLIRRMYKLVGDKWNLIAGRIPGRKAEEIERFWIMRHADAFSVKRNASKAEDS 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02394 80 Gene3D - 21 80 - -
Pumo8g02394 80 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 16 63 - -
Pumo8g02394 80 SMART sant 18 66 IPR001005 -
Pumo8g02394 80 FunFam Transcription factor TRY 22 80 - -
Pumo8g02394 80 SUPERFAMILY Homeodomain-like 23 61 IPR009057 -
Pumo8g02394 80 Pfam Myb-like DNA-binding domain 22 61 IPR001005 -
Pumo8g02394 80 CDD SANT 22 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02394 Pumo-Chr8 61120610 61123802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02394 22 60 MYB Transcription Factor Family AT5G52600 58.974 9.41e-13 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo8g02394 Myb_DNA-binding 9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02394 K09422 - gmx:100814431 152.525