Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02393 ATGGAAAGTGACAAGAGTTGGGAGCAGAACGCACTCATCAGTGAGCTAATTCAGGGGTTGGAGATAGCAAGAAAGTTGAAGGAAGACTTGAGTTTACCCTCTAATTCGGTTGACACTAGGGACTCACTGCTGCAGAGGATATTATCTTCTTATGACAAGGCTTTACTTATTCTGAGATGGAATGAATCCATGCAACAAGCAGCTAATACTTCGTCACCACAGTCCCCGGTAACCGTTGACAAAAGTCCTCTGACTCTGAGGGAAGAAGATCATCAAGAACTTAAACACAATTCAAAGAAAAGAAAGATGATGCCGAAATGGACGGAACAGATTAGAGTGAGGATCCAGAATGGCTTTGAAGGACCCCTCGAAGATGGTTACAGCTGGAGAAAATATGGACAGAAAGACATCCTTAGTGCAAAATATCCCAGAAGCTATTATAGGTGCACCTTCCGCAAAACTAAGGGCTGCCTCGCCACGAAGCAAGTGCAGAGATCAGAAGAAGACCCCACTATCTTTGACATAACTTACCGAGGAAGCCACACATGTAAGGGAAACGATGCCGTTCTGCCGCCAAAGTCACCGGATACACATGAGAAAGAGAAACCGCATGGTTATGATAGTAATAAGGTTCAGTTTCAGCATGCACAAGAAAGCCTTGTACCAAAGTACACAAACACTTTGACTGTCAAAACGGATAACATAACGGCACCGTTTGGATGCATGACACAAGATAACTACCACGCCTTATTTCCTAATTCTTTGGTCCTAGAGAATGATCCCTTTTTCAGCACCCTTTCCCAAACATCCTTGTTATCTCCAAACACACCTGAATCAAATTATTTTGTGTCTCCGACTTTCCTCGTACATGACTGTAACAAGCCGTGCCCTGATTCTGAAGTTCCCGGGATCGATTCAGCTGATACATCAACCACCAGTTCTCCAATTTTCGACTTTAATTTCTCACTCGTTGCAGTGGGAATTGATGCAAATTTCCCCTTCAATGCCTCGGGGTTTTTATCCTGA 1026 0.4376 MESDKSWEQNALISELIQGLEIARKLKEDLSLPSNSVDTRDSLLQRILSSYDKALLILRWNESMQQAANTSSPQSPVTVDKSPLTLREEDHQELKHNSKKRKMMPKWTEQIRVRIQNGFEGPLEDGYSWRKYGQKDILSAKYPRSYYRCTFRKTKGCLATKQVQRSEEDPTIFDITYRGSHTCKGNDAVLPPKSPDTHEKEKPHGYDSNKVQFQHAQESLVPKYTNTLTVKTDNITAPFGCMTQDNYHALFPNSLVLENDPFFSTLSQTSLLSPNTPESNYFVSPTFLVHDCNKPCPDSEVPGIDSADTSTTSSPIFDFNFSLVAVGIDANFPFNASGFLS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02393 341 FunFam WRKY transcription factor 53 109 186 - -
Pumo8g02393 341 Gene3D WRKY domain 109 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo8g02393 341 SUPERFAMILY WRKY DNA-binding domain 122 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo8g02393 341 SMART WRKY_cls 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo8g02393 341 MobiDBLite consensus disorder prediction 184 206 - -
Pumo8g02393 341 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 215 IPR044810 GO:0003700
Pumo8g02393 341 ProSiteProfiles WRKY domain profile. 118 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo8g02393 341 Pfam WRKY DNA -binding domain 124 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02393 Pumo-Chr8 61115878 61117431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02393 6 235 WRKY Transcription Factor Family AT4G23810 38.023 3.39e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo8g02393 WRKY 2e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02393 8 61115878 61117431 Pumo8g02393 8 61115878 61117431 ECH
Pumo8g02393 8 61115878 61117431 Pumo7g00676 7 11149197 11152498 ECH
Pumo8g02393 8 61115878 61117431 Pumo6g03272 6 75774865 75777526 PCT