Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02382 ATGACTGCGCCACCGACGAAGTACACTCAGCACACCAAACTTGTCATACCCACCGAACAAGACCCACCCAAACACCCCTATCCCAGACTCGTCAGAATAACCGTCACAGACACCGACGCCACCGACTCCTCCAGCGACGAAGAACAAACCTTAAACTTCAACTCTTCCACGCGCCACCGACAACGACAGAGAAAGTTCGTCAACGAGATTTCTATCGAGAACGAGGGCGTCGTTTCGAGGAAGAGAATTCGAAGCAGAAACAGCAGTGTGGGCAAAGTCAGAGCTTCAGACAGTCGGCGCGTGTCGAACGGCAAGAAGTTCCGGGGAGTGAGACAGAGGCCTTGGGGAAAATGGGCGGCGGAAATACGAGACCCGTCGCGACGCGTACGGTTATGGTTGGGTACCTACGACACTGCTGAGGAAGCTGCTTTGGTGTACGACAACGCGGCCATTAAGCTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCACCTCCCACGGGAGAGGAAACTCATAACAAGAATCTCTTTTCTCCCACTTCCGTGCTTCACTCTTGTTCCTTGTCCGACGAAGCTGACTCCGTAACGGCCAAAGACGATGAGTCCTCCTCCGTCTCGGAGAATAAGGTCAAAGCTGAGTCTCCGTTTCCGAGCGAAATACAATTCGACTTCCGAGGTTGTTCGCCGCCGCCGGAGACTGTGTTGTTCTGCGATGATGATTGGTCTGGTGTGTTTCTCACTGCTTGTGAGGATTTTGGTTTCAAAAGTTGGCATACGGACAGAAATCGTGACTTTTTCCAAGATATCGACGATTTGTTTCTCTCGGATCCCCTTCTTGCTCTCTGA 849 0.5253 MTAPPTKYTQHTKLVIPTEQDPPKHPYPRLVRITVTDTDATDSSSDEEQTLNFNSSTRHRQRQRKFVNEISIENEGVVSRKRIRSRNSSVGKVRASDSRRVSNGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFITPPPTGEETHNKNLFSPTSVLHSCSLSDEADSVTAKDDESSSVSENKVKAESPFPSEIQFDFRGCSPPPETVLFCDDDWSGVFLTACEDFGFKSWHTDRNRDFFQDIDDLFLSDPLLAL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02382 282 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Pumo8g02382 282 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Pumo8g02382 282 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
Pumo8g02382 282 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Pumo8g02382 282 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Pumo8g02382 282 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Pumo8g02382 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 204 - -
Pumo8g02382 282 MobiDBLite consensus disorder prediction 84 104 - -
Pumo8g02382 282 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Pumo8g02382 282 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Pumo8g02382 282 MobiDBLite consensus disorder prediction 1 16 - -
Pumo8g02382 282 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Pumo8g02382 282 MobiDBLite consensus disorder prediction 36 57 - -
Pumo8g02382 282 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02382 Pumo-Chr8 61039824 61041001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02382 24 282 AP2-EREBP Transcription Factor Family AT4G11140 42.333 9.13e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g02382 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02382 - - gmx:100779905 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02382 8 61039824 61041001 Pumo8g02382 8 61039824 61041001 ECH
Pumo8g02382 8 61039824 61041001 Pumo6g00434 6 5436853 5438133 PCT