Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02357 ATGGCGAAGGTGCTGGAGAAGAAAGCGAAGGAAGCATTCTTCGACGACGACTTTGCTCTCGCCGTTGATCTCTACTCCGAAGCCATACAATTGGATCCCAACGACGCCCATCTCTTCGCCGACAGAGCCCAAGCCCATATTAAACTCAACGCTTTCCCTGAAGCGGTTTCCGATGCGAGCAAAGCCATCCAATTAAACCCTTCCTTGTCCAAGGCTTATCTTCGTAAAGGCACCGCTTGTATGAAACTCGAAGAATATCACACTGCCAAGGTAGCGCTACAAAACGGTGCCCATTTTGCGCAAGACGATTCAAGATTCGCCAACTTGATTCAAGAATGTGATCGCTGCATTGCAGAGGAATCAAGTGGTCTTACTAGCACCTTATCATCAAATGGGTCCGTAACATCTGGTAATGGTTCCCATTTGAGCAATACAAATGATGGGATGACTAAAGAAGCTGAAGGAGACAGTTTGGTATCCCAAATCAATGAAGTCACACTAAACAGACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAGCAAAAGATGTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTTACTATTGATGTTCCTGGCCAAGATGCCTATCATTATCAACCTCGATTGTTTGGGAAGATAATTCCCAATAACTGCAGAGTAGAGGTTTTGTCAACCAAAATTGAAATTCGTCTTGCAAAAGCTGAAGCTATTAATTGGATATCTCTGGAATATAGCAAGGATACGCTTCCCCCAATAATAAACAGGCCTATTGTTCAATCTGAAAGGCCTGCATACCCATCATCAAAACCAAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGAAGGTATGGAGTTGAAAAAATGGGAGTATTGA 1113 0.4268 MAKVLEKKAKEAFFDDDFALAVDLYSEAIQLDPNDAHLFADRAQAHIKLNAFPEAVSDASKAIQLNPSLSKAYLRKGTACMKLEEYHTAKVALQNGAHFAQDDSRFANLIQECDRCIAEESSGLTSTLSSNGSVTSGNGSHLSNTNDGMTKEAEGDSLVSQINEVTLNRPKYRHEYYQKPEEVVVTIFAKGISAKDVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKIIPNNCRVEVLSTKIEIRLAKAEAINWISLEYSKDTLPPIINRPIVQSERPAYPSSKPRTRDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02357 370 SUPERFAMILY HSP20-like chaperones 168 268 IPR008978 -
Pumo8g02357 370 CDD p23_CS_SGT1_like 175 258 - -
Pumo8g02357 370 Gene3D - 170 261 IPR008978 -
Pumo8g02357 370 ProSiteProfiles SGS domain profile. 279 370 IPR007699 -
Pumo8g02357 370 MobiDBLite consensus disorder prediction 125 153 - -
Pumo8g02357 370 FunFam Protein SGT1 homolog 1 127 - -
Pumo8g02357 370 ProSiteProfiles CS domain profile. 169 258 IPR007052 -
Pumo8g02357 370 FunFam Protein SGT1 homolog A 167 269 - -
Pumo8g02357 370 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Pumo8g02357 370 MobiDBLite consensus disorder prediction 350 370 - -
Pumo8g02357 370 PANTHER PROTEIN SGT1 HOMOLOG 2 368 IPR044563 GO:0051087
Pumo8g02357 370 Pfam CS domain 173 248 IPR007052 -
Pumo8g02357 370 SMART tpr_5 36 69 IPR019734 GO:0005515
Pumo8g02357 370 SMART tpr_5 2 35 IPR019734 GO:0005515
Pumo8g02357 370 SMART tpr_5 70 103 IPR019734 GO:0005515
Pumo8g02357 370 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Pumo8g02357 370 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Pumo8g02357 370 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pumo8g02357 370 Pfam SGS domain 288 368 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02357 Pumo-Chr8 60809626 60813787 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02357 1 112 U-box Gene Family AT3G07370 28.571 2.84e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02357 K12795 - gmx:100784022 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02357 8 60809626 60813787 Pumo8g02357 8 60809626 60813787 ECH