Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo8g02352 | ATGGCGAAGGTGCTGGAGAAGAAAGCGAAGGAAGCATTCTTCGACGACGACTTTGCTCTCGCCGTTGATCTCTACTCCGAAGCCATACAATTGGATCCCAACGACGCCCATCTCTTCGCCGACAGAGCCCAAGCCCATATTAAACTCAACGCTTTCCCTGAAGCGGTTTCCGATGCGAGCAAAGCCATCCAATTAAACCCTTCCTTGTCCAAGGCTTATCTTCGTAAAGGCACCGCTTGTATGAAACTCGAAGAATATCACACTGCCAAGGTAGCGCTACAAAACGGTGCCCATTTTGCGCAAGACGATTCAAGATTCGCCAACTTGATTCAAGAATGTGATCGCTGCATTGCAGAGGAATCAAGTGGTCTTACTAGCACCTTATCATCAAATGGGTCCGTAACATCTGGTAATGGTTCCCATTTGAGCAATACAAATGATGGGATGACTAAAGAAGCTGAAGGAGACAGTTTGGTATCCCAAATCAATGAAGTCACACTAAACAGACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAGCAAAAGATGTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTTACTATTGATGTTCCTGGCCAAGATGCCTATCATTATCAACCTCGATTGTTTGGGAAGATAATTCCCAATAACTGCAGAGTAGAGGTTTTGTCAACCAAAATTGAAATTCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATACGCTTCCCCCAATAATAAACAGGCCTATTGTTCAATCTGAAAGGCCTGCATACCCATCATCAAAACCAAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGAAGGTATGGAGTTGAAAAAATGGGAGTATTGA | 1113 | 0.4277 | MAKVLEKKAKEAFFDDDFALAVDLYSEAIQLDPNDAHLFADRAQAHIKLNAFPEAVSDASKAIQLNPSLSKAYLRKGTACMKLEEYHTAKVALQNGAHFAQDDSRFANLIQECDRCIAEESSGLTSTLSSNGSVTSGNGSHLSNTNDGMTKEAEGDSLVSQINEVTLNRPKYRHEYYQKPEEVVVTIFAKGISAKDVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKIIPNNCRVEVLSTKIEIRLAKAEAINWTSLEYSKDTLPPIINRPIVQSERPAYPSSKPRTRDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY | 370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo8g02352 | 370 | SUPERFAMILY | HSP20-like chaperones | 168 | 268 | IPR008978 | - | |
| Pumo8g02352 | 370 | CDD | p23_CS_SGT1_like | 175 | 258 | - | - | |
| Pumo8g02352 | 370 | ProSiteProfiles | SGS domain profile. | 279 | 370 | IPR007699 | - | |
| Pumo8g02352 | 370 | MobiDBLite | consensus disorder prediction | 125 | 153 | - | - | |
| Pumo8g02352 | 370 | FunFam | Protein SGT1 homolog | 1 | 127 | - | - | |
| Pumo8g02352 | 370 | Gene3D | - | 170 | 261 | IPR008978 | - | |
| Pumo8g02352 | 370 | FunFam | Protein SGT1 homolog A | 170 | 261 | - | - | |
| Pumo8g02352 | 370 | Gene3D | Tetratricopeptide repeat domain | 1 | 122 | IPR011990 | GO:0005515 | |
| Pumo8g02352 | 370 | MobiDBLite | consensus disorder prediction | 350 | 370 | - | - | |
| Pumo8g02352 | 370 | Pfam | CS domain | 173 | 248 | IPR007052 | - | |
| Pumo8g02352 | 370 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Pumo8g02352 | 370 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Pumo8g02352 | 370 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Pumo8g02352 | 370 | SUPERFAMILY | TPR-like | 3 | 113 | IPR011990 | GO:0005515 | |
| Pumo8g02352 | 370 | ProSiteProfiles | TPR repeat profile. | 2 | 35 | IPR019734 | GO:0005515 | |
| Pumo8g02352 | 370 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Pumo8g02352 | 370 | Pfam | SGS domain | 288 | 368 | IPR007699 | - | |
| Pumo8g02352 | 370 | PANTHER | PROTEIN SGT1 HOMOLOG | 2 | 368 | IPR044563 | GO:0051087 | |
| Pumo8g02352 | 370 | ProSiteProfiles | CS domain profile. | 169 | 258 | IPR007052 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo8g02352 | Pumo-Chr8 | 60743660 | 60747819 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo8g02352 | 1 | 112 | U-box Gene Family | AT3G07370 | 28.571 | 2.74e-08 | 52.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo8g02352 | K12795 | - | gmx:100784022 | 624.009 |