Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02350 ATGGATTGGGATTTGCAAGCTATTGTGGGATGCACCAAAGCCCCAGCCACCATCGTGGACAAGGACAACCCGCATGTCATTTTTTCTCAACAACATTTCTGTTTTGAACAAGGAGACCTACTTTGCAATTTTCAGGAATTCTCAGAAACCACAACAGTGGTTGATGAATTAGAAGAACTTTACAAACCTTTCTACCCCCATAACCCTCTTCCCATCGTTTCAAATTACTCCCCACCTATACCCGATGATAAAACTGAAGAAGTCAAAGTACTCAAACCATCAAACAAAGTAGCAGTACAAGATTTGCATGATCCCTCAGCATCTAAATGCAGAAAAAGCAAGAAGAATAAGAGGGTGGTGAAGCATGTGACAGCAGCAGATCATGGTGTTTCGGACCCATGGGCATGGCGTAAATATGGGCAGAAACCAATAAAGGGATCACCCTATCCTCGTAGCTATTATAGATGCAGCAGCTCCAAAGGATGTTTGGCTAGGAAACACGTGGAACGGAGCCATTTGGATCCTGGGGTTTTCATAGTTACCTACACTGCAGAACACAGCGATCCTCACCCTACACGCAAAAACTCACAACCACGCAAGAACAGTTCCACAATTGCACCTCCAAGAACTCATGATGATGATCAACAGACTTCAACGCCTGTGGTGGCAGAGGCTATCGAACAAAGGAGTAAGGAGCTTAAGAAAGAGGAAGCTTTTGTAGAAGGTGATAGTTGGTTTTCCAAGCATCCAAGTTGA 756 0.4418 MDWDLQAIVGCTKAPATIVDKDNPHVIFSQQHFCFEQGDLLCNFQEFSETTTVVDELEELYKPFYPHNPLPIVSNYSPPIPDDKTEEVKVLKPSNKVAVQDLHDPSASKCRKSKKNKRVVKHVTAADHGVSDPWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKHVERSHLDPGVFIVTYTAEHSDPHPTRKNSQPRKNSSTIAPPRTHDDDQQTSTPVVAEAIEQRSKELKKEEAFVEGDSWFSKHPS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02350 251 MobiDBLite consensus disorder prediction 184 251 - -
Pumo8g02350 251 SUPERFAMILY WRKY DNA-binding domain 129 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo8g02350 251 SMART WRKY_cls 130 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo8g02350 251 Pfam WRKY DNA -binding domain 132 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo8g02350 251 MobiDBLite consensus disorder prediction 196 224 - -
Pumo8g02350 251 FunFam WRKY transcription factor 22 111 184 - -
Pumo8g02350 251 Gene3D WRKY domain 112 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo8g02350 251 ProSiteProfiles WRKY domain profile. 125 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo8g02350 251 MobiDBLite consensus disorder prediction 227 243 - -
Pumo8g02350 251 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 38 223 IPR044810 GO:0003700
Pumo8g02350 251 Coils Coil 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02350 Pumo-Chr8 60729351 60730529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02350 2 227 WRKY Transcription Factor Family AT4G23550 40.249 2.63e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo8g02350 WRKY 2.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02350 K13426 - gmx:102667019 320.857