Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02347 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCAGGTAGAACTGACAACGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCAATCACCACTACACAAAGTGTTGATCACCACCCCCAGTTCAATTATAATTCCAATCAACTAGATCACTTTGGCAACCAAGAAAATGTAACAGCAAATAAGCCACCGGTACAAGAAACCTTATTTTCCTCGACGTGCCCCCTATTTATGTTTGACACTAGTTCATTAGATCAAGGGACAACAACAGTAGACACCACCAATGTACGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCAGTACTGAAACGTGGAACTTGAGCCACCATCAAGTCCATGCACTTCCTCCTCAACTAGCAGCAACTTTTACAGCAACAACAGTTATTGATACCACGAATTATCTGCCACCATTGATAGAGAACGTGGAAAACATGGTGCCAAATATGGAAGTACAGTCTTGTAGTATAGACGAGGAAGGAGAAATGGCACTAGAGTGTTTGCGGAGACAAGATTTGAATGAGTGGGTGGAGAATCAACAACAATGTCCCAGCTTTCTTTTCTGGGACAATATTAATGTTGAAGGACAACTTGGAGGGGAAGAACTTGCACCAAACACGTCAAATATGGGAACCAATACACTTTCACCTTTTCCTTCCTCTTTATGA 975 0.4256 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTTQSVDHHPQFNYNSNQLDHFGNQENVTANKPPVQETLFSSTCPLFMFDTSSLDQGTTTVDTTNVRAELFQDSLGLSSTETWNLSHHQVHALPPQLAATFTATTVIDTTNYLPPLIENVENMVPNMEVQSCSIDEEGEMALECLRRQDLNEWVENQQQCPSFLFWDNINVEGQLGGEELAPNTSNMGTNTLSPFPSSL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02347 324 FunFam Transcription factor MYB26 68 137 - -
Pumo8g02347 324 CDD SANT 69 112 IPR001005 -
Pumo8g02347 324 MobiDBLite consensus disorder prediction 303 324 - -
Pumo8g02347 324 Gene3D - 68 140 - -
Pumo8g02347 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo8g02347 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo8g02347 324 PANTHER MYB DOMAIN PROTEIN 55 1 241 - -
Pumo8g02347 324 CDD SANT 17 61 IPR001005 -
Pumo8g02347 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo8g02347 324 SMART sant 66 114 IPR001005 -
Pumo8g02347 324 SMART sant 13 63 IPR001005 -
Pumo8g02347 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo8g02347 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo8g02347 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo8g02347 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo8g02347 324 MobiDBLite consensus disorder prediction 304 324 - -
Pumo8g02347 324 Gene3D - 6 66 - -
Pumo8g02347 324 FunFam MYB transcription factor 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02347 Pumo-Chr8 60693223 60695605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02347 1 298 MYB Transcription Factor Family AT1G63910 52.691 5.55e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g02347 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02347 K09422 K02947 gmx:100797787 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02347 8 60693223 60695605 Pumo6g00465 6 5839349 5842463 PCT