Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02339 ATGGCTCGACAACTGTGCGAAGAGAAATCATCATCTGGATTCTGCTACTCTGATGTATCATCGGGAAATCAAAATCCAACGATGCTGGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCACCACGGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTCCTTCCTCTTCCAAAACCATCAACGACTCTTCCACCACTTTCTACCACCATGACTACAATAACAACAACAAGCATGCAGATTTCACACCCGCCAATATTTCTGAAACAAGTGCCGAGAATCTAATCGTGGGAACCCACGATTCAGCCCCGTGGCAAGACAACAACAACAGGTTTGATGATTCTTCTCTAAGGTGTGTGTTCCCTTGTGAACCCAACGAAAGGCCTAGTCAAGGTCTTTCGCTCTCTCTTAGTTCCACCAACCCTTCCTCTATCGGGTTGCAGTCTTTTGAGCTAAGACAAACAAGCCATCATCCTGATTTTGTTTCGTCAAGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTTTCTGTTCAACAGCAACAACAGATGTTACAAGATGGGTATGTGACTTCTAATTCTAAAGCTGCAAGTGTTTATCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTACTTGGTGCCTGCACAGGACCTTCTGAACGAGTTTTGTAGCCTAGGCGCAAAGCAAAGCGAGGTGGGAAAGCCAAAATCGTTGAAGAAGCAGTGGGAAGAGGAAAATAACGGTATCGGTTCCTCGAAGAAGCATTCTCTGACCTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAAGCACTACCGCAATCAGATGAGGAGCGTGGTGTCGTCGTTTGAAGCAGTGGCGGGGAATGGTGCTGCCACGGTGTACTCAGCTTTGGCGTTGAAAGCCATGTCAAGACATTTCAGGTGTTTGAAAGATGGGATTTTGGCGCAGATTCAAACAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGCGAAACGCCAAGGCTCAAAGTCATTGACCAAACACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACCCACCCTTGGAGACCCCAACGTGGCCTTCCCGAGCGTGCCGTTTCAGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCGAGCGATGTTGATAAACATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCATGAGAACAACATGGCTTCCTCAGAAGGGGCTACTGATCAAGACAATGATATAAACCCAAATAATGTTCAAAACCCTCCACCTCCTTCATCACGATCAGAGGATCAGAAGCCATCACTGGTTCGAATTGACTCGGAGTGTGCGTCCTCCATCATCAATAACCACACCCCAGATAACAAAAACGACCCAAAGGGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTTGATTTTTCAACGTACACTCACCACTCCTCGGGCATGGTTTCTTACGGAAATAATGATCAGAATGGGAACAACCAGAGTGGGGTGTCTTTGACGCTAGGGTTACAGCAGCATGGGGTGAGTCTAGCGTTCCCACCAGCAACACAGAGTTCACTGTACTACCCAAGGGACCAAATTGAAGATTGTCAGCCAGTTCAGTACTCTCTTTTGGATGGAGAAGGACAAAACCTGCCTTACAGGAATTTGATGGGAGCACAGCTTCTGCATGACTTGGCAGGATAG 1917 0.4747 MARQLCEEKSSSGFCYSDVSSGNQNPTMLVNQIQGFVSDPEMYNLTTGMEMIGFPKSDTNAVMWRSFIPKPGPSSSKTINDSSTTFYHHDYNNNNKHADFTPANISETSAENLIVGTHDSAPWQDNNNRFDDSSLRCVFPCEPNERPSQGLSLSLSSTNPSSIGLQSFELRQTSHHPDFVSSSSREGFFGKPVSVQQQQQMLQDGYVTSNSKAASVYQQGHFLVKNSKYLVPAQDLLNEFCSLGAKQSEVGKPKSLKKQWEEENNGIGSSKKHSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMRSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGILAQIQTTRKAMGEKDPVAPGTTRGETPRLKVIDQTLRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNMASSEGATDQDNDINPNNVQNPPPPSSRSEDQKPSLVRIDSECASSIINNHTPDNKNDPKGQEQCFGSVELDFSTYTHHSSGMVSYGNNDQNGNNQSGVSLTLGLQQHGVSLAFPPATQSSLYYPRDQIEDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02339 638 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Pumo8g02339 638 SUPERFAMILY Homeodomain-like 400 466 IPR009057 -
Pumo8g02339 638 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Pumo8g02339 638 CDD homeodomain 399 460 IPR001356 GO:0003677
Pumo8g02339 638 Gene3D - 402 464 - -
Pumo8g02339 638 SMART prehox3 218 348 IPR006563 -
Pumo8g02339 638 FunFam BEL1-like homeodomain protein 4 402 464 - -
Pumo8g02339 638 MobiDBLite consensus disorder prediction 474 511 - -
Pumo8g02339 638 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 483 - -
Pumo8g02339 638 SMART HOX_1 399 463 IPR001356 GO:0003677
Pumo8g02339 638 MobiDBLite consensus disorder prediction 478 492 - -
Pumo8g02339 638 Pfam Associated with HOX 224 346 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02339 Pumo-Chr8 60637922 60642119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02339 88 637 Homeobox Transcription Factor Family AT5G41410 46.393 1.36e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo8g02339 POX 6.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02339 - - gmx:100803088 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02339 8 60637922 60642119 Pumo8g02339 8 60637922 60642119 ECH
Pumo8g02339 8 60637922 60642119 Pumo6g00473 6 5920214 5923654 PCT