Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02336 ATGGGATTTCCAGTGGGGTACACAGAGTTGGTGCTACCGAAGGTGTTCCTGCAGGTGCTGTCCATATTGGGCCTCATCAGGAGACTCATCACCGTCCTCTTGTGCTACATGGGGTTCCACGATTTCTTCGAATCGGACATTGCGTGGCCGGAGCGGGAGGCGGAATTCCAGTCGGTGTCGGCGGTGCTGATCCGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGATGGCGGTGGCGGACCCGCCGGAGAGTTGCGCGGTGTGCCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACGAACTGCCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGGTACGATCAAAGAACGTGTCCCCTCTGTCGGACACCCTTCATACCCCACCATATGCAAGCTGCCTTCAATGATAGACTATGGGCAGCTTCAGGGATCCCTGATTTCTATCACAATGATGAGTAA 477 0.5639 MGFPVGYTELVLPKVFLQVLSILGLIRRLITVLLCYMGFHDFFESDIAWPEREAEFQSVSAVLIREILPVVKFSEMAVADPPESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPDFYHNDE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02336 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 134 IPR013083 -
Pumo8g02336 158 PANTHER RING ZINC FINGER PROTEIN-RELATED 21 148 - -
Pumo8g02336 158 Pfam Ring finger domain 84 128 IPR001841 -
Pumo8g02336 158 SUPERFAMILY RING/U-box 71 134 - -
Pumo8g02336 158 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
Pumo8g02336 158 FunFam RING-H2 finger protein ATL73 64 135 - -
Pumo8g02336 158 SMART ring_2 85 127 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02336 Pumo-Chr8 60608437 60609718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02336 1 149 C3H Transcription Factor Family AT1G63840 57.419 1.29e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02336 K16281 - gmx:102665617 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02336 8 60608437 60609718 Pumo8g02336 8 60608437 60609718 ECH
Pumo8g02336 8 60608437 60609718 Pumo6g00475 6 5956378 5957376 PCT