Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02334 ATGTCTTCTGATCTCTATACTTTTGACATTTCTTACCACAGACATTCAAGCCTAGACAACATGGTCTCCTATGATGGAAATGGAAACCTTCTGTTTTTCTCTGACCCTTACTCTTTCCCTATCCTCACTGCCTCTCCAATTGATGATGTGGCTCAAGGGAATTTTAACAATTCTCTTGACCCTTTTTCCCCTTCTTCCTTCTCTATTTCTCCTCAGGAAAATGAGAGCTTCTTCCATGCTAACCTTGTGCAGCCTCTGTCTAATGGCCCAGATATAAAGGGTGAGTTTAGAAGTTTCTCTTCTTTGCATGGGTCCGAAGTGACAAGTGAGGAGTGCCAAATGGGTTTGGATTATTCCTACAATCAGCACTTTCTTTCTCAAACATGTAACGGTTCTGAAAGTGCATCAAAGTTAATACAAAGGAGCTTCAGCTGTAACTCTATTGATGGGAAGCCTGGTTTCCCCTTTGAGCCTCACCCTGACACTCTCATGGACTCCACAAATTTTCAATGGCAAGCCTTGAACTCCCCTGAAAACTTTTTCTTCACAGGACAAATGAGGAGGGTCTGCAGTACAGGAGATTTGCAGAACATGAAAACAACTGATATGTCTCAAACGGGGAGTCCCTTGTTGGAGGAAGCAAACTTCAAAGTAGGACGTTATAGTGCCGAAGAAAGAAAAGAAAAAATCTCTAAATACAGAGCCAAGAGAAGCCAGAGGAAGTTCAACAAGATTATCAAGTATGCATGCCGAAAGACACTAGCCGACAATCGAACCCGCATACGTGGCAGATTCGCACGCAACGACGAAATCACCGAGATTCCGAAAGCTCCTTGTTCAAGTTCAACAACAGAAGAATATGAAGACGAGTTCTGGGTTGAATTCATTGAAGGATTAAATGAGGTCATGGGTTAA 915 0.4262 MSSDLYTFDISYHRHSSLDNMVSYDGNGNLLFFSDPYSFPILTASPIDDVAQGNFNNSLDPFSPSSFSISPQENESFFHANLVQPLSNGPDIKGEFRSFSSLHGSEVTSEECQMGLDYSYNQHFLSQTCNGSESASKLIQRSFSCNSIDGKPGFPFEPHPDTLMDSTNFQWQALNSPENFFFTGQMRRVCSTGDLQNMKTTDMSQTGSPLLEEANFKVGRYSAEERKEKISKYRAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARNDEITEIPKAPCSSSTTEEYEDEFWVEFIEGLNEVMG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02334 304 ProSiteProfiles CCT domain profile. 226 268 IPR010402 GO:0005515
Pumo8g02334 304 Pfam CCT motif 226 268 IPR010402 GO:0005515
Pumo8g02334 304 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 84 277 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02334 Pumo-Chr8 60598130 60600386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02334 222 273 C2C2-CO-like Transcription Factor Family AT5G24930 46.154 2.55e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo8g02334 CCT 1.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02334 - - gmx:100786853 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02334 8 60598130 60600386 Pumo8g02334 8 60598130 60600386 ECH
Pumo8g02334 8 60598130 60600386 Pumo6g00478 6 5979764 5981830 PCT