Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo8g02333 | ATGTTCCTAGGTCTTCGCATGCACAAGAGCATTGCTTCATTTGCTGCATTCTCTCTGCAGAACACAACAGTACCAGAGGAGCATGTGCATGTCCCGCAATCATCTCACCATGGTGCTCCTCCTGCTGTTTCCGAGGAACTCTTAAATGATACTAATCTAGAAAATTCAAGTCCTGATACTTCTAGCATGCCTCTTGCCCATGTTCCTGTCTCTTCCAATGTTCCTTTAGGTGCCACTCAAACTTCACCTGTAGCTCAAGAAACCTGTGGTGACCAGACTAATACATCGCAGCAAGCTACAAGTTCTAGTTCAACTCAAGAAACAGTTGCTGGTGACAATTATGGGACTGGGACCTCATCTAAGTCAGAAAAGCTGAAGGAATCAGAATGCAAAGTCCATACTGCTTTAAAAATTGGGTCGGCAATGGATTCTGAAATTGAACTTACAAAGTTGGCAAAACCTGACATCATAGTGGAAGAGGAGGAGGATGAATGCCCAATTTGTTTAAAAGAGTATGATGCAGGGAATCCAAATCTCTCCACAAAATGTGGCCATCATTTTCACCCTGAATGCATTCTTGGATGGATCAAAAGAAGGAATGCTTGTCCTGTGTGTGATCGGGTTTGTCATCTTAATCATGATCGTCTGTCTTGA | 654 | 0.4312 | MFLGLRMHKSIASFAAFSLQNTTVPEEHVHVPQSSHHGAPPAVSEELLNDTNLENSSPDTSSMPLAHVPVSSNVPLGATQTSPVAQETCGDQTNTSQQATSSSSTQETVAGDNYGTGTSSKSEKLKESECKVHTALKIGSAMDSEIELTKLAKPDIIVEEEEDECPICLKEYDAGNPNLSTKCGHHFHPECILGWIKRRNACPVCDRVCHLNHDRLS | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo8g02333 | 217 | MobiDBLite | consensus disorder prediction | 51 | 125 | - | - | |
| Pumo8g02333 | 217 | SUPERFAMILY | RING/U-box | 159 | 212 | - | - | |
| Pumo8g02333 | 217 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 37 | 211 | - | - | |
| Pumo8g02333 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 165 | 206 | IPR001841 | - | |
| Pumo8g02333 | 217 | SMART | ring_2 | 165 | 205 | IPR001841 | - | |
| Pumo8g02333 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 214 | IPR013083 | - | |
| Pumo8g02333 | 217 | MobiDBLite | consensus disorder prediction | 51 | 121 | - | - | |
| Pumo8g02333 | 217 | Pfam | Ring finger domain | 163 | 205 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo8g02333 | Pumo-Chr8 | 60589548 | 60592617 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo8g02333 | 26 | 207 | C3H Transcription Factor Family | AT5G41350 | 41.304 | 7.98e-32 | 113 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo8g02333 | - | - | vra:106765380 | 189.889 |