Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02320 ATGGATGGGAGAGAAGGTATGGCATTTCCTGGTGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGTGGGGTTAGTGGGTCTGGTCCAGGAACTGGAACACAAAGTGGAGGGTTTCAACCACCCTCTGGGTTTAGAGCTTTGTCAAATGTCCCTTCAGGTTCTACATTTAAAGTAGAGTCTCACTCTCAGTCTCAACCTCAGCCTCAGCCTCAGCCTCAGCATGCTAGTTTTGGTCATGGCATTAACATAGGTTCCTCTCCTGATAGTGGAGCTGGAGTACCTTCTTCTGGTGAGCCTGTGAAAAAGAAAAGAGGAAGGCCTAGGAAGTATGGTCCTGATGGATCTGTTTCCTTGATGCTCTCTCCCATGTCTGCCACTGCTAATTCCACCCCAGGATCAGGCACTTCTTCAGAGAAACGGCCCAGAGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCCACTCTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCTTTTTCACATCATGTTATCACTGTTGGAGTTGGGGAGGACATTGTAGCAAAGTTATTGTCATTTGCACAGCAGAGGCCAAGGGCTGTGTGCATCTTAACGGGAACTGGGACAGTTTCTTCAGTCACTCTGCGCCAGCCCGCTTCTACTAGTGTCAGTGTTACTTATGAGGGCCGATTTCAAATATTATGTTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCTCAAAGTAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATTATTGGTGGTGGTGTTACTAGGCTTATTGCTGCAAGTCCAGTGCAGGTGGTAGCATGCAGTTTCGTATATGGGGGCTCAAGGCCAAAGACTAAACAAGTGACCACCACTACTACTACTACAAAAGATAGCAGTTCAGAGCCTCAGAGTAGTGATAAGTTAGCTTCTCCAGCCAGTGCTCCACCTAATCAAAACTACACCTCTTCTTCTCCTGCCCCAGGCATTTGGCCTGCTGCATCATCAAGGCAAGTAGAGGTGAAAAGTGCACATCCACACACTGGTATTGACTTGACTCGTGGGTGA 1089 0.4839 MDGREGMAFPGGSAPYYMQHRGGGVSGSGPGTGTQSGGFQPPSGFRALSNVPSGSTFKVESHSQSQPQPQPQPQHASFGHGINIGSSPDSGAGVPSSGEPVKKKRGRPRKYGPDGSVSLMLSPMSATANSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNSSAGLAFSHHVITVGVGEDIVAKLLSFAQQRPRAVCILTGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEEGGPQSRTGGMSVSLSSPDGHIIGGGVTRLIAASPVQVVACSFVYGGSRPKTKQVTTTTTTTKDSSSEPQSSDKLASPASAPPNQNYTSSSPAPGIWPAASSRQVEVKSAHPHTGIDLTRG 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02320 362 Gene3D - 171 303 - -
Pumo8g02320 362 ProSiteProfiles PPC domain profile profile. 164 306 IPR005175 -
Pumo8g02320 362 MobiDBLite consensus disorder prediction 292 338 - -
Pumo8g02320 362 MobiDBLite consensus disorder prediction 28 93 - -
Pumo8g02320 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 173 285 IPR005175 -
Pumo8g02320 362 PRINTS AT-hook-like domain signature 138 149 IPR017956 GO:0003677
Pumo8g02320 362 PRINTS AT-hook-like domain signature 102 112 IPR017956 GO:0003677
Pumo8g02320 362 MobiDBLite consensus disorder prediction 1 153 - -
Pumo8g02320 362 MobiDBLite consensus disorder prediction 120 138 - -
Pumo8g02320 362 CDD DUF296 173 284 IPR005175 -
Pumo8g02320 362 MobiDBLite consensus disorder prediction 292 362 - -
Pumo8g02320 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 331 IPR039605 GO:0003680
Pumo8g02320 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02320 Pumo-Chr8 60429163 60433859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02320 1 362 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 50.518 2.44e-102 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02320 - - gmx:100790569 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02320 8 60429163 60433859 Pumo6g00505 6 6286561 6290646 PCT