Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02307 ATGGGTAACAAGTTTGAGGGTTGGGACTGTATGAGCATGGGTAGTTTGCGGTGCTGTGGGAACCTTTCGCCTGAGCCACACTATCCGTCGATGACGAGTTTGGAAGAAGGATCAGATGAGGCCAAAGTGGTTTTCAGTGTTATGGGAATGACGTGCGCTGCTTGCGCTGGATCCGTTGAGAAAGCCGTCAAACGCTTACCAGGGATTCGAGAGGCCGTTGTTGATGTCTTGAATCATAAAGCTCTGGTTCTTTACTACCCGCAAATGGTTAACGAGGAGAGGATACGTGAGGCCATAGAAGATGCCGGATTTGAGGCTAAAGTCATGGAAGAAGACTCCAACATCACCTCCGCTCAAATATGCCGAATACACGTACGAGGCATGACTTGCACTTCTTGCTCCGCCACCATTGAATCAAGTCTACAATCCCTTCGTGGGGTGCATAAGGCACGAGTGGCCCTAACAACTGAAGAAGCAGAAGTCCGCTATGACCCTAAGATTGTTACCCACAACCACCTAATGAATGTCATAGAAGAAATCGGGTTTGAAGCCATACTAATAAGCACAGGGGAACACATAAGCAAGATTGAACTTAAAATTGATGGCATTAAAAATGAGCAATCCCTGAATGTCATTGAACGCTCTCTTCATGCACTTCCAGGTGTTGAAACCATAGACATATATCCAGACATTAACAAAATTGCCATAACTTATAAACCATACATGATAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACAGGCTCAGGGTGCTTTAAAGCGGTGATATTCCCAAATGATGGAGGAAGAGAAGCACAAAGACAAGAGGAAATTAATCGATACTTCAAGTTGTTCATATGGAGTTTGGTTTTCACCATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACGTGTTTTGGATATCAAAGTTGTCAATATGTTGAATATTGGACTTCTCTTGAGGTGTGAATTTGCTACCCCGATGCAGTTTATCATAGGGAGAAGGTTCTACGTTGGGGCATATAAAGCATTGCGTAAAGGTTCTGCTAACATGGATGTGTTGATAGCCTTAGGGACAAATGCAGCATACTTCTATTCTCTCTATGTTGTGGAAAGAGCTGCTTTCTCTCGGCATTTCATAGGCAGCGATTTCTTTGAGACCAGCTCTATGCTTATTTCGTTTATTCTATTGGGGAAGTATTTGGAAGTGTTGGCTAAGGGGAAGACATCACAGGCCATTGCCAAGCTTATGGATTTGACACCTGAGATAGCAACCTTGTTAACTCAAGATGATGAAGGAAATGTCGTTAGTGAAAGACAAATTGATAGTCGATTGATACAAAAGGACGATGTGATCAAGGTTGTTCCTGGTGCAAAAGTAGCATCGGATGGTTTTGTCATATGGGGACAGAGTCATGTAAATGAGAGCATGATAACTGGAGAGGCAAGGCCTGTGGCGAAGAGGAAGGGCGATATGGTGATTGGAGGCACTGTGAATGAGAATGGGGTTTTGCACGTTAAGGTGACAAGGGTTGGATCAGAGAGTGCTCTCTCTCAGATTGTTCGACTTGTTGAGTCTGCCCAAATGGCTAAAGCTCCTGTCCAAAAACTTGCTGATCATATTTCTAAATATTTTGTTCCTTTGGTCATTGTGCTTTCTCTTTCAACATGGTTTTCTTGGTTTCTAGCTGGAAAGTTGCATGCATACCCAAAATCTTGGATACCATCTTCCACGAACAGCTTTGAGCTTGCACTTCAGTTTGGGATTTCAGTCATGGTCATTGCCTGCCCTTGTGCTCTAGGCCTAGCCACTCCTACGGCTGTTATGGTTGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGGCAAGCATTAGAAAATGCACACAAGGTGAATTGCATTGTGTTTGATAAGACAGGGACCCTCACGGTTGGGAAGCCAGTGGTTGTTACTACAAAACTCTTCAAGAAGATGTCACTTAAAGATTTCTATGAATTTGCTGCTGCAGCAGAGGTAAACAGCGAACATCCAATAGCCAAGGCCATTGTTGAGCAAGCTAAAAAGATCATAGAAGAAGAACAAAATCATCCCTGGCCAGAAGCACGCGACTTTGTTTCTGTTTCAGGCCATGGAGTGAAGGCCATTGTTCTAAACAGGGAAATAATGGTTGGGAATAAAAAGATGATGTTGGATCATAACATAGCCATTTCAGCAGATGTTGAAGAAACACTAGCAGAAGCTGAAAGCTTGGCTCAAACTGGGATTCTAGTATCCTTGGATGGAGAAGTCGCTGGAGTTTTGGCTGTATCTGATCCGCTAAAACCTGGTGCCAAAGAAGTCATTTCCATTCTTAATTCCATGAAAATCGATAGCATCATGGTGACAGGTGATAACTGGGGAACTGCCAACTCCATAGCAAGACAAGCTGGTATTAAAACTGTCATGGCAGAGGCTCAACCTGAGACTAAAGCGAACAAAATAAAAGAATTGCAGAGTTGTGGCTACACGGTGGCAATGGTGGGAGATGGCATAAACGATTCACCAGCACTTGTGGCAGCTGATGTTGGAATGGCAATTGGTGCTGGCACAGACATAGCTATTGAGGCAGCTGACATTGTTCTCATGAAGAGCAACTTGGAGGATATAATAATTGCAATTGACCTTGCAAATAAAACTTTCTCTCGTATACGTCTAAACTATATTTGGGCTTTGGGTTACAATCTGCTAGCCATCCCAATTGCCGCGGGTGTCCTTTACTCCTCCACTAGATTCCGATTACCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTCTCAGTGTCGTTTGCTCATCCCTCTTATTAAAGAATTACAAGAGACCTACCAAGCTAAACAACTTGGACATAAATGGTATAAAAATTGAATAA 2940 0.4347 MGNKFEGWDCMSMGSLRCCGNLSPEPHYPSMTSLEEGSDEAKVVFSVMGMTCAACAGSVEKAVKRLPGIREAVVDVLNHKALVLYYPQMVNEERIREAIEDAGFEAKVMEEDSNITSAQICRIHVRGMTCTSCSATIESSLQSLRGVHKARVALTTEEAEVRYDPKIVTHNHLMNVIEEIGFEAILISTGEHISKIELKIDGIKNEQSLNVIERSLHALPGVETIDIYPDINKIAITYKPYMIGPRTFIEVIESTGSGCFKAVIFPNDGGREAQRQEEINRYFKLFIWSLVFTIPVFLTSMVLMYIPGVKRVLDIKVVNMLNIGLLLRCEFATPMQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERAAFSRHFIGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPEIATLLTQDDEGNVVSERQIDSRLIQKDDVIKVVPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWFSWFLAGKLHAYPKSWIPSSTNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALENAHKVNCIVFDKTGTLTVGKPVVVTTKLFKKMSLKDFYEFAAAAEVNSEHPIAKAIVEQAKKIIEEEQNHPWPEARDFVSVSGHGVKAIVLNREIMVGNKKMMLDHNIAISADVEETLAEAESLAQTGILVSLDGEVAGVLAVSDPLKPGAKEVISILNSMKIDSIMVTGDNWGTANSIARQAGIKTVMAEAQPETKANKIKELQSCGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLANKTFSRIRLNYIWALGYNLLAIPIAAGVLYSSTRFRLPPWIAGAAMAASSLSVVCSSLLLKNYKRPTKLNNLDINGIKIE 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02307 979 ProSitePatterns E1-E2 ATPases phosphorylation site. 647 653 IPR018303 -
Pumo8g02307 979 PRINTS Copper-transporting ATPase signature 827 844 - -
Pumo8g02307 979 PRINTS Copper-transporting ATPase signature 628 643 - -
Pumo8g02307 979 PRINTS Copper-transporting ATPase signature 923 937 - -
Pumo8g02307 979 PRINTS Copper-transporting ATPase signature 343 362 - -
Pumo8g02307 979 PRINTS Copper-transporting ATPase signature 395 414 - -
Pumo8g02307 979 NCBIfam heavy metal translocating P-type ATPase 358 959 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo8g02307 979 ProSiteProfiles Heavy-metal-associated domain profile. 119 185 IPR006121 GO:0046872
Pumo8g02307 979 SUPERFAMILY HMA, heavy metal-associated domain 191 259 IPR036163 GO:0046872
Pumo8g02307 979 Gene3D - 119 190 - -
Pumo8g02307 979 SUPERFAMILY HAD-like 644 956 IPR036412 -
Pumo8g02307 979 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 19 973 - -
Pumo8g02307 979 NCBIfam copper ion binding protein 42 106 IPR006122 GO:0005507
Pumo8g02307 979 NCBIfam copper ion binding protein 123 184 IPR006122 GO:0005507
Pumo8g02307 979 SFLD p-type atpase 627 901 IPR044492 -
Pumo8g02307 979 CDD HMA 44 107 IPR006121 GO:0046872
Pumo8g02307 979 SUPERFAMILY Calcium ATPase, transduction domain A 445 531 IPR008250 -
Pumo8g02307 979 ProSitePatterns Heavy-metal-associated domain. 47 76 IPR017969 GO:0046872
Pumo8g02307 979 PRINTS P-type cation-transporting ATPase superfamily signature 481 495 - -
Pumo8g02307 979 PRINTS P-type cation-transporting ATPase superfamily signature 797 807 - -
Pumo8g02307 979 PRINTS P-type cation-transporting ATPase superfamily signature 775 786 - -
Pumo8g02307 979 PRINTS P-type cation-transporting ATPase superfamily signature 645 659 - -
Pumo8g02307 979 PRINTS P-type cation-transporting ATPase superfamily signature 873 885 - -
Pumo8g02307 979 PRINTS P-type cation-transporting ATPase superfamily signature 850 869 - -
Pumo8g02307 979 FunFam Copper-transporting ATPase 1, putative 413 535 - -
Pumo8g02307 979 Pfam haloacid dehalogenase-like hydrolase 641 864 - -
Pumo8g02307 979 Pfam Heavy-metal-associated domain 123 183 IPR006121 GO:0046872
Pumo8g02307 979 Pfam Heavy-metal-associated domain 44 105 IPR006121 GO:0046872
Pumo8g02307 979 CDD P-type_ATPase_Cu-like 286 946 - -
Pumo8g02307 979 Gene3D - 194 264 - -
Pumo8g02307 979 SUPERFAMILY HMA, heavy metal-associated domain 119 191 IPR036163 GO:0046872
Pumo8g02307 979 Pfam E1-E2 ATPase 426 623 - -
Pumo8g02307 979 PRINTS Copper-transporting ATPase 1 signature 97 117 - -
Pumo8g02307 979 PRINTS Copper-transporting ATPase 1 signature 42 67 - -
Pumo8g02307 979 PRINTS Copper-transporting ATPase 1 signature 68 91 - -
Pumo8g02307 979 PRINTS Copper-transporting ATPase 1 signature 143 164 - -
Pumo8g02307 979 FunFam Probable copper-transporting ATPase HMA5 731 907 - -
Pumo8g02307 979 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
Pumo8g02307 979 SFLD C1.7: P-type atpase like 627 901 - -
Pumo8g02307 979 SUPERFAMILY Calcium ATPase, transmembrane domain M 395 637 IPR023298 -
Pumo8g02307 979 SUPERFAMILY HMA, heavy metal-associated domain 38 112 IPR036163 GO:0046872
Pumo8g02307 979 Gene3D - 37 109 - -
Pumo8g02307 979 FunFam ATPase copper transporting beta 116 189 - -
Pumo8g02307 979 ProSiteProfiles Heavy-metal-associated domain profile. 194 260 IPR006121 GO:0046872
Pumo8g02307 979 FunFam Copper-transporting ATPase HMA5 40 111 - -
Pumo8g02307 979 Gene3D - 652 730 IPR023299 GO:0000166
Pumo8g02307 979 Gene3D - 731 781 IPR023299 GO:0000166
Pumo8g02307 979 ProSitePatterns Heavy-metal-associated domain. 125 154 IPR017969 GO:0046872
Pumo8g02307 979 NCBIfam HAD-IC family P-type ATPase 398 932 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo8g02307 979 CDD HMA 125 184 IPR006121 GO:0046872
Pumo8g02307 979 Gene3D - 413 535 - -
Pumo8g02307 979 Gene3D - 612 907 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02307 Pumo-Chr8 60311235 60317458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02307 41 979 Primary Pumps ATPases AT1G63440 72.853 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02307 K17686 - gmx:100817431 1731.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02307 8 60311235 60317458 Pumo8g02307 8 60311235 60317458 ECH
Pumo8g02307 8 60311235 60317458 Pumo6g00510 6 6332651 6338446 PCT