Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02306 ATGGCGAAGTTGTTAGCGTTAAGTTGCTGGCGAAACCTGTCGCCGCGACCTCACTACCCGTCGATGCCCAAATACCCCAAGGGACAGGGTGCCGCCGCCGTCGACGAGCTCTCAGAGTCCACCGCTCTTCTCTCCGTCGTCGGAATGAGCTGCGCAGCCTGCGCCGGATCCGTCGAGAAGGCCGTGAAACGCCTCCCCGGGATCCGCGAAGCCATCGTCGATGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAACGAGGAGACAATTCGCGAGGCAATTGAAGACGCGGGTTTCGAAGCCGCCTTACTCACAGACGTCACGCATGACAAATCCGTTCAAGTGTGCCGCATACAGATCAAAGGAATGACCTGCACCTCCTGCTCCTCCACGCTCGAATCCGTTTTGCAATCCCTTCACGGCGTCCTCGAAGCCCGCGTGGGCCTGGCCACCGAAGAGGCCCAAGTCCACTACAACCCAAACCTCCTCACCACCAACCACATCCTACAAGCCATACAAGATTCCGGATTCGAAGCCCAGCTTATTAGTTCAAGCGAAGACCTAAGCAAGATAGACCTCCACGTGGAAGGTGCCATGAAACTCATCGAAGATTCTCTGCGGACACTCCCAGGAGTCCTTGCCGTGGACATAACAACGGAACTAAACAAAATATCGGTTTCTTACAAACCGGACGTCACAGGACCCAGAAATTTCATTAACCTCATTCAGGAAACAGGGAATGGAAATTTCAAGGCAAAGATATATCCTACAGAAGAAGAAGGTCATAGACGCCAGGAAACAAAACAGTATTATAAATCTTTCTTATGGAGCTTGGTCTTTACTATTCCTGTGTTTCTAACCTCCATGGTGTTTATGTATGTTCCTGGAATTAAAGACGCGCTTGATGCGAAAATTGTGAACATGCTTACCGTGGGGGAGATTTTGCGGTGGGTGCTTTCCACGCCGGTTCAGTTCGTTCTCGGGTGGCGGTTTTACTATGGTTCTTATAAGTCATTGCGCCGTGGCTCTGCGAACATGGATGTTCTCATTGCGTTGGGAACAAACGCAGCGTATTTTTACTCTGTGTACTCTGTTTTGAGAGCTGCTACCTCTAAGCACTTCGAGGGGAATGATTTCTTTGAGACGAGTGCTATGCTTATTTCGTTCATTCTGCTTGGGAAGTATCTTGAGATTCTGGCGAAGGGGAAGACTTCCGATGCGATTGCCAAGCTCATGAACTTGACACCGGACACAGCTATTTTGTTGAGTGTGGATGAGCATGGAAATGTTGTTGGGGAGGAGGAGATTGATAGCAGGTTGGTTCAGAAGAACGATGTGATTAAGGTTGTTCCTGGGGCGAAGGTGGCTTCGGATGGATTTGTTGTGTGGGGGCAGAGTCACGTAAATGAGAGCATGATAACGGGGGAGGCGCGTCCCGTGGCGAAGAGGAAAGGAGACACTGTTATTGGAGGGACTGTGAATGAGAATGGAGTTTTGCATGTTAAGGCAACAAGGGTGGGATCGGAGAGTGCTCTTTCACAGATTGTTCGCCTTGTGGAGTCTGCGCAGATGGCTAAAGCGCCTGTTCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGGTGATTGTGATCTCGTTCACTACTTGGCTTGCCTGGTTTTTGGCTGGAAAATTTCATGCTTACCCCAAGTCTTGGATACCGTCTTCTATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATATCGGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCCACGCCAACTGCTGTTATGGTTGGGACTGGAGTTGGTGCATCTCAGGGTGTGCTCATCAAAGGAGGGCAAGCATTAGAGAGTGCGCATAAGGTGAACTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCTGTGATAGTGAGAACAGAACTATTGACAAAAATGGTGCTCCAGGAATTCTATGAACTTGTGGCTGCAGCTGAGGTGAATAGTGAGCATCCACTGGCCAAGGCTGTTGTTGAGTATGCCAAAAGATTTAGAGATGAAGAGAACCCTTCTTGGCCAGAAGCACGAGATTTTGTTTCCATCACGGGACATGGAGTAAAGGCCACTGTTCATAATAAGGAAATAATTGTGGGTAATAAGAGCTTATTGACTGACCATAACATTGCAATTCCTGATGCTGCTGAAGATATGCTTGCTGAAGCCGAAAAGATGGCTCAAACAGGAATTGTAGTATCTATAAATGGGAAAGTAGCTGGGGTTTTAGCAGTATCCGATCCATTGAAACCAGGTGCTAAAGAAGTTATTTCCATTCTCAAGTCCATGAAAATCAAGAGCATCATGGTGACTGGGGACAACTTTGGAACTGCTAGTTCTATTGCGAGGGAAGTAGGAATTGAAAATGTTATTGCTGAGGCCAAACCGGATCAGAAAGCAGAGAAAGTGAAAGACTTGCAGGCTTCTGGGTACACTGTGGCTATGGTGGGGGATGGTATCAATGATTCACCTGCACTTGTGGCAGCGGATGTGGGAATGGCTATAGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTCATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGACCTTTCCAGAAAAACGTTTTCCCGTATACGCCTCAATTACTTTTGGGCATTGGGTTATAACTTGCTTGGTATCCCAATTGCTGCTGGAGCTCTTTTCCCTTCTACAAGGTTCAGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCCTCTGTCAGTGTTGTTTGCTGTTCTCTGCTGTTGAAATATTACAGAAGACCCAGGAAGCTGGACAACCTTGAGATACGAGGCATAAGCATCGAATCATCCAATGATATGATGCATCATAATTGA 2940 0.4816 MAKLLALSCWRNLSPRPHYPSMPKYPKGQGAAAVDELSESTALLSVVGMSCAACAGSVEKAVKRLPGIREAIVDVLNNRAHVIFYPSFVNEETIREAIEDAGFEAALLTDVTHDKSVQVCRIQIKGMTCTSCSSTLESVLQSLHGVLEARVGLATEEAQVHYNPNLLTTNHILQAIQDSGFEAQLISSSEDLSKIDLHVEGAMKLIEDSLRTLPGVLAVDITTELNKISVSYKPDVTGPRNFINLIQETGNGNFKAKIYPTEEEGHRRQETKQYYKSFLWSLVFTIPVFLTSMVFMYVPGIKDALDAKIVNMLTVGEILRWVLSTPVQFVLGWRFYYGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKHFEGNDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLTPDTAILLSVDEHGNVVGEEEIDSRLVQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVIVISFTTWLAWFLAGKFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVRTELLTKMVLQEFYELVAAAEVNSEHPLAKAVVEYAKRFRDEENPSWPEARDFVSITGHGVKATVHNKEIIVGNKSLLTDHNIAIPDAAEDMLAEAEKMAQTGIVVSINGKVAGVLAVSDPLKPGAKEVISILKSMKIKSIMVTGDNFGTASSIAREVGIENVIAEAKPDQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNLLGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPRKLDNLEIRGISIESSNDMMHHN 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02306 979 ProSiteProfiles Heavy-metal-associated domain profile. 118 184 IPR006121 GO:0046872
Pumo8g02306 979 SUPERFAMILY HAD-like 636 947 IPR036412 -
Pumo8g02306 979 ProSitePatterns Heavy-metal-associated domain. 124 153 IPR017969 GO:0046872
Pumo8g02306 979 Gene3D - 604 898 IPR023214 -
Pumo8g02306 979 ProSitePatterns Heavy-metal-associated domain. 46 75 IPR017969 GO:0046872
Pumo8g02306 979 NCBIfam HAD-IC family P-type ATPase 390 923 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo8g02306 979 NCBIfam heavy metal translocating P-type ATPase 350 950 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo8g02306 979 SUPERFAMILY HMA, heavy metal-associated domain 40 107 IPR036163 GO:0046872
Pumo8g02306 979 CDD HMA 44 106 IPR006121 GO:0046872
Pumo8g02306 979 FunFam Copper-transporting ATPase 1, putative 405 527 - -
Pumo8g02306 979 SUPERFAMILY HMA, heavy metal-associated domain 195 251 IPR036163 GO:0046872
Pumo8g02306 979 CDD HMA 122 183 IPR006121 GO:0046872
Pumo8g02306 979 SUPERFAMILY Calcium ATPase, transmembrane domain M 382 912 IPR023298 -
Pumo8g02306 979 PRINTS P-type cation-transporting ATPase superfamily signature 766 777 - -
Pumo8g02306 979 PRINTS P-type cation-transporting ATPase superfamily signature 841 860 - -
Pumo8g02306 979 PRINTS P-type cation-transporting ATPase superfamily signature 637 651 - -
Pumo8g02306 979 PRINTS P-type cation-transporting ATPase superfamily signature 864 876 - -
Pumo8g02306 979 PRINTS P-type cation-transporting ATPase superfamily signature 473 487 - -
Pumo8g02306 979 PRINTS P-type cation-transporting ATPase superfamily signature 788 798 - -
Pumo8g02306 979 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 11 966 - -
Pumo8g02306 979 Gene3D - 118 191 - -
Pumo8g02306 979 ProSiteProfiles Heavy-metal-associated domain profile. 188 254 IPR006121 GO:0046872
Pumo8g02306 979 Pfam E1-E2 ATPase 436 615 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase 1 signature 142 163 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Pumo8g02306 979 ProSiteProfiles Heavy-metal-associated domain profile. 40 106 IPR006121 GO:0046872
Pumo8g02306 979 Pfam Heavy-metal-associated domain 45 104 IPR006121 GO:0046872
Pumo8g02306 979 Pfam Heavy-metal-associated domain 122 182 IPR006121 GO:0046872
Pumo8g02306 979 SFLD p-type atpase 619 893 IPR044492 -
Pumo8g02306 979 SUPERFAMILY HMA, heavy metal-associated domain 114 188 IPR036163 GO:0046872
Pumo8g02306 979 FunFam Probable copper-transporting ATPase HMA5 742 898 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase signature 818 835 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase signature 387 406 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase signature 407 425 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase signature 335 354 - -
Pumo8g02306 979 PRINTS Copper-transporting ATPase signature 546 560 - -
Pumo8g02306 979 ProSitePatterns E1-E2 ATPases phosphorylation site. 639 645 IPR018303 -
Pumo8g02306 979 Gene3D - 35 107 - -
Pumo8g02306 979 Pfam haloacid dehalogenase-like hydrolase 633 855 - -
Pumo8g02306 979 Gene3D - 405 527 - -
Pumo8g02306 979 FunFam Copper-transporting ATPase HMA5 39 110 - -
Pumo8g02306 979 CDD P-type_ATPase_Cu-like 276 951 - -
Pumo8g02306 979 FunFam Copper-transporting ATPase HMA5 117 188 - -
Pumo8g02306 979 SFLD C1.7: P-type atpase like 619 893 - -
Pumo8g02306 979 NCBIfam copper ion binding protein 122 183 IPR006122 GO:0005507
Pumo8g02306 979 NCBIfam copper ion binding protein 44 105 IPR006122 GO:0005507
Pumo8g02306 979 Gene3D - 722 772 IPR023299 GO:0000166
Pumo8g02306 979 Gene3D - 644 721 IPR023299 GO:0000166
Pumo8g02306 979 SUPERFAMILY Calcium ATPase, transduction domain A 437 523 IPR008250 -
Pumo8g02306 979 Gene3D - 195 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g02306 Pumo-Chr8 60300591 60305208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g02306 3 970 Primary Pumps ATPases AT1G63440 74.545 0.0 1510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02306 K17686 - gmx:100816893 1755.73